GtRNAdb

tRNAscan-SE Analysis of Sulfolobus islandicus Y G 57 14

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tRNAs Sorted by tRNA Isoacceptor Typeplain text version
[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 48 1075103 1075030 Ala CGC tttaattggt ttattatgat0 0 87.31 74.3412.97  
chr 36 1651569 1651496 Ala GGC cttaaccagt ctgcgttagg0 0 85.06 72.0912.97  
chr 33 1760923 1760850 Ala TGC ttttactcaa ccttttatag0 0 87.87 74.9012.97  
 
chr 34 1737215 1737141 Arg CCG tatttatgtt catactacat0 0 81.66 74.007.66  
chr 14 1693701 1693788 Arg CCT tctaataatt cacattatca1693740 1693752 81.12 70.7910.33  
chr 10 1444745 1444819 Arg GCG aatactttga cacaagtcat0 0 83.64 73.4010.24  
chr 4 1264131 1264205 Arg TCG tatcataagg tacacttaaa0 0 83.35 73.1210.23  
chr 15 1735416 1735505 Arg TCT attttatgtt cacatattat1735455 1735469 78.36 68.1210.24  
 
chr 31 1959219 1959133 Asn GTT attgtttctc ctttattact1959182 1959169 66.43 44.0322.40  
 
chr 20 1799827 1799899 Asp GTC acgtgaaatt cgttgaagat0 0 78.66 63.2715.39  
 
chr 22 1875139 1875252 Cys GCA tattattgtt tttagaagat79 92 57.02 42.5914.43  
 
chr 46 1207216 1207144 Gln CTG atttaaatac ccttagtggg0 0 64.29 44.8319.46  
chr 38 1598947 1598875 Gln TTG gtatagaatt ccttagtggg0 0 64.85 45.3919.46  
 
chr 5 1281191 1281283 Glu CTC tagcgactac tttctattag0 0 88.47 76.5911.88  
chr 12 1465150 1465239 Glu TTC atgaggacgt ctaattttcc0 0 87.41 75.3112.10  
 
chr 9 1339471 1339546 Gly CCC tagtaaaact tacatctttt0 0 86.93 76.7210.21  
chr 49 879947 879858 Gly CCC tgtataataa ctaattttcc879907 879894 75.25 74.490.76  
chr 40 1585526 1585451 Gly GCC attaaacagt tacaatattt0 0 87.05 74.9412.11  
chr 37 1645995 1645920 Gly TCC attatacagt tacataatgt0 0 87.49 77.2810.21  
 
chr 21 1804928 1805001 His GTG atagcggctg ctttcttatg0 0 84.72 69.9714.75  
 
chr 1 1077040 1077125 Ile GAT taaattaaga ttacttatgt1077078 1077089 79.85 67.3412.51  
 
chr 47 1153464 1153366 Leu CAA tttaaaatgt tacatttcct1153425 1153411 64.74 45.1619.58  
chr 42 1289120 1289036 Leu CAG actttaacat gtgataaaat0 0 66.00 40.5525.45  
chr 50 120682 120598 Leu GAG gtattggtgt taaaattatt0 0 68.54 48.9519.59  
chr 41 1291164 1291065 Leu TAA ataatagatt taataactct1291124 1291110 66.09 44.0222.07  
chr 45 1264599 1264515 Leu TAG tttataatgc ctgtttttaa0 0 66.71 41.2125.50  
 
chr 23 1879268 1879363 Lys CTT ttttattgat cgcactaaat1879306 1879327 83.06 71.6111.45  
chr 24 1897577 1897673 Lys TTT acatacgttt cgcaatggtt1897615 1897637 81.13 71.269.87  
 
chr 43 1287658 1287585 Met CAT ttgtatatgt tgaaattttt0 0 86.71 71.0015.71  
chr 11 1456631 1456722 Met CAT tcttataagt tctccctaat1456670 1456686 84.91 72.8212.09  
chr 19 1799631 1799733 Met CAT ggggtagaat tttcatttaa1799670 1799694 73.42 50.4223.00  
 
chr 8 1332865 1332938 Phe GAA ttattataat cctccagaat0 0 84.13 69.9414.19  
 
chr 35 1653052 1652977 Pro CGG taaataatag tacacaagat0 0 73.26 53.4119.85  
chr 2 1092296 1092392 Pro GGG ctttattaaa ttgtgggggg1092336 1092356 72.09 58.5213.57  
chr 29 1960909 1960834 Pro TGG actatatgag ctcagttagt0 0 85.70 71.5814.12  
 
chr 7 1287124 1287231 Ser CGA atatttaatt tatattgatt1287161 1287184 50.43 26.2924.14  
chr 26 1958761 1958845 Ser GCT ttaaagtagt catataaatt0 0 72.61 50.4422.17  
chr 18 1798291 1798374 Ser GGA tatatagagt cttataaatt0 0 69.85 41.5428.31  
chr 13 1643583 1643667 Ser TGA actataattt tatgattatt0 0 74.89 51.2623.63  
 
chr 17 1777084 1777171 Thr CGT gtaaaatgat ttaaagcatt1777123 1777135 85.82 75.6410.18  
chr 27 2427716 2427790 Thr GGT acattatgat tagtcggtag0 0 92.48 79.0813.40  
chr 3 1207380 1207469 Thr TGT ttttcttaat tcttccaaat1207419 1207433 85.95 75.7710.18  
 
chr 25 1935725 1935863 Trp CCA aattagttat tacatctaaa1935763 1935827 76.71 66.2810.43  
 
chr 6 1285610 1285698 Tyr GTA tctaattaga cttctttacc1285650 1285662 75.08 56.6218.46  
 
chr 32 1897914 1897840 Val CAC gctagctaaa tatgtaaaac0 0 86.69 73.4813.21  
chr 16 1756571 1756645 Val GAC ctagtattaa aactttaaat0 0 83.85 71.6412.21  
chr 44 1281530 1281456 Val TAC aataatcagt ctaactgtat0 0 88.14 73.3614.78  


Note: Only introns located between position 37 and 38 are listed in the table above.



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.