GtRNAdb

tRNAscan-SE Analysis of Sulfolobus islandicus Y G 57 14

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tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 1077040 1077125 Ile GAT taaattaaga ttacttatgt1077078 1077089 79.85 67.3412.51  
chr 2 1092296 1092392 Pro GGG ctttattaaa ttgtgggggg1092336 1092356 72.09 58.5213.57  
chr 3 1207380 1207469 Thr TGT ttttcttaat tcttccaaat1207419 1207433 85.95 75.7710.18  
chr 4 1264131 1264205 Arg TCG tatcataagg tacacttaaa0 0 83.35 73.1210.23  
chr 5 1281191 1281283 Glu CTC tagcgactac tttctattag0 0 88.47 76.5911.88  
chr 6 1285610 1285698 Tyr GTA tctaattaga cttctttacc1285650 1285662 75.08 56.6218.46  
chr 7 1287124 1287231 Ser CGA atatttaatt tatattgatt1287161 1287184 50.43 26.2924.14  
chr 8 1332865 1332938 Phe GAA ttattataat cctccagaat0 0 84.13 69.9414.19  
chr 9 1339471 1339546 Gly CCC tagtaaaact tacatctttt0 0 86.93 76.7210.21  
chr 10 1444745 1444819 Arg GCG aatactttga cacaagtcat0 0 83.64 73.4010.24  
chr 11 1456631 1456722 Met CAT tcttataagt tctccctaat1456670 1456686 84.91 72.8212.09  
chr 12 1465150 1465239 Glu TTC atgaggacgt ctaattttcc0 0 87.41 75.3112.10  
chr 13 1643583 1643667 Ser TGA actataattt tatgattatt0 0 74.89 51.2623.63  
chr 14 1693701 1693788 Arg CCT tctaataatt cacattatca1693740 1693752 81.12 70.7910.33  
chr 15 1735416 1735505 Arg TCT attttatgtt cacatattat1735455 1735469 78.36 68.1210.24  
chr 16 1756571 1756645 Val GAC ctagtattaa aactttaaat0 0 83.85 71.6412.21  
chr 17 1777084 1777171 Thr CGT gtaaaatgat ttaaagcatt1777123 1777135 85.82 75.6410.18  
chr 18 1798291 1798374 Ser GGA tatatagagt cttataaatt0 0 69.85 41.5428.31  
chr 19 1799631 1799733 Met CAT ggggtagaat tttcatttaa1799670 1799694 73.42 50.4223.00  
chr 20 1799827 1799899 Asp GTC acgtgaaatt cgttgaagat0 0 78.66 63.2715.39  
chr 21 1804928 1805001 His GTG atagcggctg ctttcttatg0 0 84.72 69.9714.75  
chr 22 1875139 1875252 Cys GCA tattattgtt tttagaagat79 92 57.02 42.5914.43  
chr 23 1879268 1879363 Lys CTT ttttattgat cgcactaaat1879306 1879327 83.06 71.6111.45  
chr 24 1897577 1897673 Lys TTT acatacgttt cgcaatggtt1897615 1897637 81.13 71.269.87  
chr 25 1935725 1935863 Trp CCA aattagttat tacatctaaa1935763 1935827 76.71 66.2810.43  
chr 26 1958761 1958845 Ser GCT ttaaagtagt catataaatt0 0 72.61 50.4422.17  
chr 27 2427716 2427790 Thr GGT acattatgat tagtcggtag0 0 92.48 79.0813.40  
chr 29 1960909 1960834 Pro TGG actatatgag ctcagttagt0 0 85.70 71.5814.12  
chr 31 1959219 1959133 Asn GTT attgtttctc ctttattact1959182 1959169 66.43 44.0322.40  
chr 32 1897914 1897840 Val CAC gctagctaaa tatgtaaaac0 0 86.69 73.4813.21  
chr 33 1760923 1760850 Ala TGC ttttactcaa ccttttatag0 0 87.87 74.9012.97  
chr 34 1737215 1737141 Arg CCG tatttatgtt catactacat0 0 81.66 74.007.66  
chr 35 1653052 1652977 Pro CGG taaataatag tacacaagat0 0 73.26 53.4119.85  
chr 36 1651569 1651496 Ala GGC cttaaccagt ctgcgttagg0 0 85.06 72.0912.97  
chr 37 1645995 1645920 Gly TCC attatacagt tacataatgt0 0 87.49 77.2810.21  
chr 38 1598947 1598875 Gln TTG gtatagaatt ccttagtggg0 0 64.85 45.3919.46  
chr 40 1585526 1585451 Gly GCC attaaacagt tacaatattt0 0 87.05 74.9412.11  
chr 41 1291164 1291065 Leu TAA ataatagatt taataactct1291124 1291110 66.09 44.0222.07  
chr 42 1289120 1289036 Leu CAG actttaacat gtgataaaat0 0 66.00 40.5525.45  
chr 43 1287658 1287585 Met CAT ttgtatatgt tgaaattttt0 0 86.71 71.0015.71  
chr 44 1281530 1281456 Val TAC aataatcagt ctaactgtat0 0 88.14 73.3614.78  
chr 45 1264599 1264515 Leu TAG tttataatgc ctgtttttaa0 0 66.71 41.2125.50  
chr 46 1207216 1207144 Gln CTG atttaaatac ccttagtggg0 0 64.29 44.8319.46  
chr 47 1153464 1153366 Leu CAA tttaaaatgt tacatttcct1153425 1153411 64.74 45.1619.58  
chr 48 1075103 1075030 Ala CGC tttaattggt ttattatgat0 0 87.31 74.3412.97  
chr 49 879947 879858 Gly CCC tgtataataa ctaattttcc879907 879894 75.25 74.490.76  
chr 50 120682 120598 Leu GAG gtattggtgt taaaattatt0 0 68.54 48.9519.59  


Note: Only introns located between position 37 and 38 are listed in the table above.



The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.