GtRNAdb

tRNAscan-SE Analysis of Taeniopygia guttata (Zebra finch) (WUSTL 3.2.4 Jul 2008)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA191
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs193


Intron Summary

tRNAs with introns
17
Arg
TCT
1
Leu
CAA
2
Ile
TAT
1
Tyr
GTA
13


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
15
GGC
 
CGC
3
TGC
7
25
GlyACC
1
GCC
8
CCC
4
TCC
6
19
ProAGG
6
GGG
 
CGG
2
TGG
1
9
ThrAGT
4
GGT
 
CGT
2
TGT
3
9
ValAAC
3
GAC
1
CAC
1
TAC
1
6

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
3
GGA
 
CGA
 
TGA
2
ACT
 
GCT
5
 
 
 
 
10
ArgACG
6
GCG
 
CCG
 
TCG
2
 
 
 
 
CCT
2
TCT
3
13
LeuAAG
 
GAG
 
CAG
7
TAG
1
 
 
 
 
CAA
2
TAA
4
14

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
10
 
 
 
 
10
AsnATT
 
GTT
8
 
 
 
 
8
Lys 
 
 
 
CTT
4
TTT
4
8
AspATC
 
GTC
7
 
 
 
 
7
Glu 
 
 
 
CTC
3
TTC
2
5
HisATG
 
GTG
5
 
 
 
 
5
Gln 
 
 
 
CTG
6
TTG
1
7

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
5
GAT
 
 
 
TAT
1
6
Met 
 
 
 
CAT
5
 
 
5
TyrATA
 
GTA
13
 
 
 
 
13
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
1
GCA
8
 
 
 
 
9
Trp 
 
 
 
CCA
3
 
 
3
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.