GtRNAdb

tRNAscan-SE Analysis of Thiomicrospira denitrificans ATCC 33889

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr 1 48708 48796 Ser GGA ttccaaagaa caaattaata0 0 66.74 32.0134.73  
chr 2 231140 231217 Pro TGG atgcgcaggt cttttatttt0 0 83.91 62.2821.63  
chr 3 231241 231317 His GTG aaacaacatg tagaaataaa0 0 73.67 64.958.72  
chr 4 231360 231436 Arg TCG aaattttgtg tttttataaa0 0 74.44 56.8117.63  
chr 5 231452 231528 Arg TCT ataaatgtat ctaatttttt0 0 82.05 54.6527.40  
chr 6 231550 231633 Leu TAG actaccatgt ttacctaaaa0 0 75.07 47.4127.66  
chr 7 342504 342580 Thr TGT caaattcgat ttgaattcga0 0 89.40 66.9322.47  
chr 8 342635 342719 Tyr GTA attatgttat ttcaatggca0 0 62.45 33.6228.83  
chr 9 342733 342809 Gly TCC aatggcacat ttgaaaattc0 0 92.88 79.4513.43  
chr 10 342965 343039 Thr GGT ttttaacttt taaggtaaag0 0 81.01 61.1319.88  
chr 11 344581 344657 Trp CCA gttaaaataa cacattaatt0 0 75.40 52.5722.83  
chr 12 432364 432447 Leu GAG acttttttgt ttttattttt0 0 66.21 32.0634.15  
chr 13 454740 454815 Ala TGC aattgaaaat tttcttattt0 0 93.12 74.9618.16  
chr 14 578251 578326 Ala TGC aattgaaaat tttcttattt0 0 93.12 74.9618.16  
chr 15 643899 643975 Met CAT cttaaaagat tattttttta0 0 82.96 72.5510.41  
chr 16 643990 644064 Asn GTT tttttaagat caacaacata0 0 78.50 51.0627.44  
chr 17 726699 726774 Ala TGC aattgaaaat tttcttattt0 0 93.12 74.9618.16  
chr 18 810425 810500 Lys TTT tagagaaaat gttttttata0 0 80.99 57.5223.47  
chr 19 810514 810590 Asp GTC ttttatatgc cgtttttgat0 0 95.10 74.4420.66  
chr 20 810608 810683 Val TAC gattttaaat tttaaaaacc0 0 92.49 70.3922.10  
chr 21 810710 810785 Glu TTC ttatgaaagt ttatttttgg0 0 39.78 14.1125.67  
chr 22 810817 810892 Val TAC tataaaaaat ttttttgatt0 0 92.49 70.3922.10  
chr 23 811014 811090 Asp GTC tatttaatgc ctacctttat0 0 95.10 74.4420.66  
chr 24 830401 830477 Met CAT tagaaacagt ctgtcaacgc0 0 85.04 50.4234.62  
chr 25 1123303 1123377 Glu TTC gctatagagt cttcatacac0 0 55.32 28.9726.35  
chr 26 1247908 1247984 Met CAT tttgtaatga attttctact0 0 89.78 62.4727.31  
chr 27 1248003 1248077 Gln TTG ctttaaatga caaaccccct0 0 69.66 42.3627.30  
chr 28 1248101 1248177 Met CAT ttaggtatgt aaaaccccat0 0 83.65 55.0128.64  
chr 29 1269325 1269398 Gln TTG tttatactat caacaaactc0 0 74.80 47.8126.99  
chr 30 1697755 1697830 Phe GAA cttaaaagat ctttaaaacc0 0 87.53 63.2224.31  
chr 31 1697966 1698041 Phe GAA aacaatttat cttcataatc0 0 85.30 59.2326.07  
chr 32 1778103 1778178 Val GAC ttccaatatt ttatctagtt0 0 74.28 45.2129.07  
chr 33 1791908 1791984 Thr TGT ctctattttc cactttagag0 0 89.40 66.9322.47  
chr 34 2144560 2144484 Ile GAT aattgaaaat ttcacatttt0 0 94.54 70.4224.12  
chr 35 1764099 1764023 Arg GCG aatgtagtat tttatttgaa0 0 77.22 50.4626.76  
chr 36 1517087 1516998 Ser GCT gtcttcaaat cttttttaaa0 0 76.42 41.7734.65  
chr 37 1091948 1091865 Leu CAA ttcgcttaaa tgttcttatc0 0 72.60 39.9732.63  
chr 38 659690 659615 Lys TTT gtttgtttat tttttacaaa0 0 80.99 57.5223.47  
chr 39 659592 659518 Glu TTC gctaaagagt ctcacaaact0 0 55.32 28.9726.35  
chr 40 644388 644314 Asn GTT tatcaaatgt tatcttcatt0 0 78.50 51.0627.44  
chr 41 69236 69162 Gly GCC tgataaaaat taaaatataa0 0 89.96 65.7924.17  
chr 42 69113 69027 Leu TAA aataacccat ttagttataa0 0 67.80 45.6922.11  
chr 43 69001 68928 Cys GCA tgttgaaact actatttata0 0 68.83 35.1133.72  
chr 44 68898 68810 Ser TGA ttacaaacgt ctataaaatc0 0 63.92 35.9427.98  


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.