GtRNAdb

tRNAscan-SE Analysis of Tetraodon nigroviridis (tetraodon) (Genoscope 8.0 Mar 2007)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA486
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
2
Predicted pseudogenes0
Total tRNAs489


Intron Summary

tRNAs with introns
30
Arg
TCT
8
Leu
CAA
4
Leu
TAA
1
His
GTG
1
Ile
TAT
5
Tyr
GTA
11


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
16
GGC
 
CGC
2
TGC
9
27
GlyACC
 
GCC
14
CCC
6
TCC
12
32
ProAGG
9
GGG
1
CGG
4
TGG
9
23
ThrAGT
25
GGT
 
CGT
13
TGT
10
48
ValAAC
9
GAC
 
CAC
15
TAC
3
27

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
12
GGA
 
CGA
2
TGA
5
ACT
 
GCT
11
 
 
 
 
30
ArgACG
14
GCG
 
CCG
2
TCG
6
 
 
 
 
CCT
8
TCT
9
39
LeuAAG
10
GAG
 
CAG
31
TAG
6
 
 
 
 
CAA
4
TAA
5
56

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
15
 
 
 
 
16
AsnATT
 
GTT
11
 
 
 
 
11
Lys 
 
 
 
CTT
17
TTT
8
25
AspATC
 
GTC
17
 
 
 
 
17
Glu 
 
 
 
CTC
13
TTC
15
28
HisATG
 
GTG
13
 
 
 
 
13
Gln 
 
 
 
CTG
17
TTG
6
23

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
14
GAT
 
 
 
TAT
5
19
Met 
 
 
 
CAT
20
 
 
20
TyrATA
 
GTA
11
 
 
 
 
11
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
12
 
 
 
 
12
Trp 
 
 
 
CCA
9
 
 
9
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.