GtRNAdb

tRNAscan-SE Analysis of Tetraodon nigroviridis (tetraodon) (Genoscope 8.0 Mar 2007)

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr1 1 4362570 4362641 Glu TTC ggcgcagcgg ctcaaacttt0 0 75.00 51.6923.31 Both
chr1 3 12020389 12020460 Glu TTC gatcacacgg tgctgttttg0 0 60.71 52.038.68 Eufind
chr1 4 15740224 15740295 Glu TTC cagagagagg ctacattttg0 0 61.02 50.2710.75 Both
chr1 5 15825914 15825987 Thr AGT tcccagaaaa ttgaaaaggn0 0 77.51 57.1720.34 Both
chr1 6 18734446 18734528 Leu CAG tctcccatgt tgttaacagt0 0 75.90 46.8929.01 Both
chr1 7 20062306 20062387 Ser AGA gcagcaccgg tcgtggcact0 0 88.95 58.2530.70 Both
chr1 8 22651884 22651956 Ala AGC tggctcgcgc cttttttttt0 0 63.68 41.0222.66 Both
chr1 9 21224168 21224096 Met CAT cgttctcgtg ctcaattttt0 0 79.46 59.1120.35 Both
chr1 10 21182560 21182489 Pro TGG ctagccgcgt tttgcttttg0 0 76.15 54.0922.06 Both
chr1 13 15230253 15230167 Arg TCT ctggcatgta cttttacatt15230216 15230203 67.45 48.4119.04 Both
chr1 14 15229432 15229347 Arg TCT cacagcatgg cttttagccc15229395 15229383 68.30 47.8520.45 Both
chr1 15 14144197 14144124 Asn GTT cctgcagcgt tgtgtgtgct0 0 82.24 58.9723.27 Both
chr1 16 10824071 10824000 His GTG gagggccccg gactttttct0 0 64.73 38.6526.08 Both
chr1 17 10823468 10823397 His GTG gagggccccg ggaaggttgg0 0 64.73 38.6526.08 Both
chr1 18 10823047 10822976 His GTG gtccccagca ggaagtcctg0 0 66.23 39.0127.22 Both
chr1 19 9304253 9304181 Val TAC gacagtatcc cgctagcttt0 0 82.67 57.6325.04 Both
chr1 21 8375092 8375020 Phe GAA ccgtccgtcg ttttccttct0 0 84.19 62.5821.61 Both
chr1 22 7919858 7919785 Thr AGT ccccaaacaa ttggaaaaga0 0 81.36 58.7822.58 Both
chr1 24 1895677 1895606 Thr CGT cctaaatgtg ttaaggagtg0 0 61.98 40.0521.93 Both
 
chr10 1 8783120 8783192 Lys TTT cgttcacgga ctactcgttt0 0 83.80 62.7821.02 Both
chr10 3 9894303 9894376 Thr AGT cgcctgagga tttttttgct0 0 82.80 62.4120.39 Both
chr10 4 9932672 9932744 Met CAT ccgccgtcag ctgctttttt0 0 74.91 54.5520.36 Both
chr10 6 11304375 11304447 Ala AGC gtcctcatcc attgtttatt0 0 63.68 41.0222.66 Both
chr10 7 11304720 11304792 Ala AGC cggtctccac gctgcttatg0 0 63.68 41.0222.66 Both
chr10 8 11603833 11603915 Leu CAG ccgcttcgac taaacgtttt0 0 75.90 46.8929.01 Both
chr10 13 4683708 4683637 Thr CGT tctaaacgtg ttaaggagtg0 0 64.81 45.8218.99 Both
chr10 14 3892185 3892113 Phe GAA ctgccctgca ttttgcactg0 0 84.19 62.5821.61 Both
 
chr11 1 1852385 1852456 Gln CTG cgctgccagc aattttgtga0 0 73.65 50.3623.29 Both
chr11 2 1853090 1853161 Gln CTG gcccctgtgc gatttattta0 0 73.65 50.3623.29 Both
chr11 3 1853391 1853462 Gln TTG ccggacccac gatttttcga0 0 69.94 49.7820.16 Both
chr11 4 2025448 2025519 Glu CTC aacccacagc catacatttt0 0 69.63 52.5417.09 Both
chr11 5 2035572 2035643 Glu CTC ctggcacagc cgtgcttttt0 0 76.61 53.9422.67 Both
chr11 6 2088406 2088478 Arg ACG gcattccaca acttttattt0 0 68.07 51.1816.89 Both
chr11 7 2090560 2090631 Glu CTC gagcctcagc cgtcctcttt0 0 76.61 53.9422.67 Both
chr11 8 2606931 2607003 Phe GAA ggcgacggag gcagggggca0 0 84.19 62.5821.61 Both
chr11 9 2611081 2611153 Phe GAA ggcgacggag gcagggggca0 0 84.19 62.5821.61 Both
chr11 10 3299170 3299241 Glu TTC aagcaaccag gtcattttta0 0 74.66 52.5022.16 Both
chr11 11 6237984 6238055 Glu CTC gagccacagc ctgagttttg0 0 76.61 53.9422.67 Both
chr11 12 7172414 7172486 Phe GAA tgatcacgtg gcgcgcacgg0 0 84.19 62.5821.61 Both
chr11 13 9378509 9378581 Arg ACG gctatcacgt ctcttttttt0 0 68.07 51.1816.89 Both
chr11 14 9385852 9385924 Arg ACG gctatcacgt ctcttttttt0 0 68.07 51.1816.89 Both
chr11 16 9407573 9407502 Glu TTC ctgaccgtag caacattttt0 0 75.00 51.6923.31 Both
chr11 17 9341856 9341775 Leu TAG cgcacgcggc ctcgttttgc0 0 64.69 42.0922.60 Both
chr11 18 9180773 9180700 Lys CTT ggcacgagga tcgctggttt0 0 70.57 47.9122.66 Both
chr11 19 5585090 5585018 Arg ACG tggttttcat ctaacatctt0 0 72.37 52.4919.88 Both
chr11 20 2088293 2088222 Glu CTC tccccgcagc cacttttaga0 0 76.61 53.9422.67 Both
chr11 21 1998062 1997990 Arg ACG ttttaagtgt agtctttttc0 0 68.07 51.1816.89 Both
chr11 22 1994648 1994576 Arg ACG tgcgtcacgt aaagcttttt0 0 68.07 51.1816.89 Both
chr11 23 1882648 1882576 Phe GAA gtcaatgtac atggagagtc0 0 84.19 62.5821.61 Both
 
chr12 1 1285943 1286016 Ile AAT gtgcacacat agtgcctttt0 0 80.66 62.1718.49 Both
chr12 2 1702704 1702776 Arg ACG tcacagcaga cacctttttg0 0 68.07 51.1816.89 Both
chr12 3 6418242 6418314 Lys TTT agctacggaa ctagtctttt0 0 83.80 62.7821.02 Both
chr12 4 11485668 11485598 Gly CCC cttcgtcacc cgcgtttttt0 0 76.98 51.0525.93 Both
chr12 5 9960216 9960135 Ser GCT acgtatagaa attgttttct0 0 85.34 57.7727.57 Both
chr12 6 6418696 6418624 Lys TTT cgacacgagc aaaattcttt0 0 83.80 62.7821.02 Both
chr12 7 3752904 3752824 Ser GCT tgcgcgccgt cttctttgct0 0 80.81 55.3825.43 Both
chr12 8 3677648 3677577 Pro TGG ttttgtgtgt aacttttgtc0 0 76.15 54.0922.06 Both
chr12 9 2863436 2863365 Gln CTG gagcgcgggg ttggtttttg0 0 73.65 50.3623.29 Both
 
chr13 2 894228 894300 Ala TGC gcagcagaga gtgagaagct0 0 51.27 32.7018.57 Both
chr13 3 2681378 2681449 His GTG ccgctagctc gcgtcaacgt0 0 64.03 37.9626.07 Both
chr13 4 5471068 5471140 Arg TCG ggcttccgcc agctttatgt0 0 73.35 54.1519.20 Both
chr13 6 9689013 9689085 Arg ACG aataaccact ttaggctttt0 0 72.37 52.4919.88 Both
chr13 7 12633779 12633850 Met CAT cattccgtcg gcaatggtgt0 0 68.98 40.9628.02 Both
chr13 9 10349232 10349145 Tyr GTA gttcactgtc accttggttt10349195 10349181 72.50 46.0926.41 Both
chr13 10 9455419 9455346 Thr AGT cgacgcccac tttcacgttt0 0 84.06 64.4519.61 Both
chr13 11 8097924 8097852 Thr TGT tgcacgaggt ggcattttgg0 0 81.27 59.0822.19 Both
chr13 12 4608909 4608837 Arg CCT cactacagaa cagctgacct0 0 70.63 54.3916.24 Both
chr13 13 4589494 4589423 Gly TCC cagtgtcatc ttgttttctt0 0 76.62 55.6121.01 Both
chr13 14 4370510 4370438 Met CAT cacccacgca ctgcttttcc0 0 72.46 52.1020.36 Both
chr13 15 4368100 4368028 Met CAT ggggcccaca ctgcttttcc0 0 72.46 52.1020.36 Both
 
chr14 1 1116864 1116945 Ser GCT gctgcacggc ttacttttct0 0 85.34 57.7727.57 Both
chr14 2 1121509 1121591 Leu CAG taaggcacgt gctacttttt0 0 75.90 46.8929.01 Both
chr14 3 1354154 1354226 Ala AGC tacagaccag ggcctttttt0 0 63.68 41.0222.66 Both
chr14 4 5026921 5027006 Tyr GTA cttccgtgtt ttcgcttttt5026958 5026970 74.07 47.6626.41 Both
chr14 6 8348634 8348706 Thr TGT cctagcggcg agcgcggttg0 0 83.03 60.4922.54 Both
chr14 7 9529530 9529601 Ala TGC ctgaccgggc cttttgttta0 0 72.71 49.1223.59 Both
chr14 8 9367757 9367685 Thr TGT tggcaggtga tttagctctt0 0 81.27 59.0822.19 Both
chr14 9 5328869 5328798 Glu CTC ccgtgcaccg catctttttt0 0 76.61 53.9422.67 Both
chr14 10 5287795 5287723 Arg CCT cactcaccaa gctgatcaga0 0 70.63 54.3916.24 Both
chr14 11 5284850 5284778 Arg CCT cgctcaccaa gctgatcaga0 0 70.63 54.3916.24 Both
chr14 12 3314743 3314661 Leu TAA tgtcatctgt aagtttattt0 0 81.03 49.4531.58 Both
chr14 13 2461583 2461512 Asp GTC ataccgccag gctcctgttt0 0 71.10 46.2124.89 Both
chr14 14 2244083 2243998 Tyr GTA cgcacatgtg acttgttttt2244046 2244034 74.07 47.6626.41 Both
chr14 15 2243817 2243746 Asp GTC cgatgaccag gttcgccttt0 0 66.53 45.6420.89 Both
chr14 16 1355891 1355819 Ala AGC gctccgcaac cttttcaaac0 0 63.68 41.0222.66 Both
chr14 17 1353924 1353852 Ala AGC tgcgtccaac cacgttttgc0 0 63.68 41.0222.66 Both
chr14 18 852972 852901 Asp GTC cagtaacact ttagcctttt0 0 71.10 46.2124.89 Both
 
chr15 1 2514606 2514677 Glu CTC ttacacagcg cttagttttt0 0 76.61 53.9422.67 Both
chr15 2 2515129 2515200 Glu CTC ttggacagcg cttagctttt0 0 76.61 53.9422.67 Both
chr15 3 3638616 3638687 Pro TGG gcgagagcgt accttttgtc0 0 76.15 54.0922.06 Both
chr15 4 6270014 6270085 Pro AGG gtttcctata tttctttttg0 0 75.92 53.8522.07 Both
chr15 5 6270585 6270656 Gly TCC tactcacggc agagtttttt0 0 76.83 56.4020.43 Both
chr15 6 6270372 6270301 Trp CCA tttgcagctg tgttcctttt0 0 74.00 52.2121.79 Both
chr15 7 3915660 3915588 Lys CTT ctcccccaaa tgtttttgat0 0 80.47 57.8122.66 Both
chr15 9 1560395 1560297 Leu TAA tccaaacacc ctttcacctg1560358 1560343 55.65 30.0325.62 Both
chr15 10 1000405 1000314 Arg TCT gaggcccgca gcttttgacg1000368 1000350 55.88 35.4320.45 Both
chr15 11 999069 998978 Arg TCT tgacccagcc ctttttgctt999032 999014 67.21 46.7620.45 Both
 
chr15_random 2 3168620 3168692 Phe GAA ccgcagtcca gcacattgat0 0 79.39 60.7618.63 Both
 
chr16 1 1645098 1645183 SeC(e) TCA tcagtaaaat gtcttatttt0 0 71.82 0.000.00 Eufind
chr16 5 5874123 5874195 Lys TTT cgcccgcgga tgaagctttt0 0 83.80 62.7821.02 Both
chr16 7 2675854 2675783 Pro CGG cgtctgttcg tttttttttt0 0 76.52 54.4622.06 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr17 1 6567681 6567763 Leu CAG gcagacagat gcttttttta0 0 77.82 48.8029.02 Both
chr17 2 8690756 8690828 Lys CTT ccggcgccag cagaagcttt0 0 80.47 57.8122.66 Both
chr17 4 11629990 11630061 Thr CGT cctaaacgtg ttaaggagag0 0 62.02 42.5919.43 Both
chr17 5 9222572 9222501 Glu TTC aaccagtatg ctacgatttt0 0 75.00 51.6923.31 Both
chr17 6 1154984 1154911 Ile AAT gtcacacaga gagcttttct0 0 80.66 62.1718.49 Both
 
chr18 1 384566 384637 Pro AGG cggacaacac agtttttctt0 0 75.92 53.8522.07 Both
chr18 2 1369072 1369144 Arg TCG tatgttcaag ttttgagcag0 0 66.63 48.9517.68 Both
chr18 3 1699133 1699205 Arg CCG gtcacacaat gcgggtgtgt0 0 65.49 49.2416.25 Both
chr18 5 9124646 9124718 Arg TCG tcccacatgt gagaagctgc0 0 61.30 47.5313.77 Both
chr18 6 9126397 9126469 Arg TCG gctcttcagg taaccagtca0 0 65.54 46.8918.65 Both
chr18 7 10290624 10290553 Cys GCA tgcctccgtg gcacaacaca0 0 65.82 47.4918.33 Both
chr18 8 2954955 2954882 Ile AAT cgacccgcgc cctcttttgg0 0 80.66 62.1718.49 Both
chr18 9 74234 74161 Thr AGT tcccaaacaa ttggaaaaca0 0 69.00 46.4322.57 Both
 
chr19 1 2061392 2061479 Tyr GTA cccctctgcc ttggcttttt2061429 2061443 71.86 45.4526.41 Both
chr19 2 2062876 2062962 Tyr GTA gcaccggagg ttcatcttaa2062913 2062926 70.61 44.2126.40 Both
chr19 3 3418327 3418399 Lys CTT agcagccacc cagcactctt0 0 80.47 57.8122.66 Both
chr19 4 3797134 3797249 Leu CAA ggagcccacc ctcttattcc3797172 3797203 54.27 36.0318.24 Both
chr19 5 5533724 5533796 Lys CTT cctctagcag cttctgtttt0 0 80.47 57.8122.66 Both
chr19 8 3799439 3799367 Lys CTT ggagctccaa cagcaacttt0 0 80.47 57.8122.66 Both
chr19 9 3797007 3796899 Leu CAA acacacactc cttttataca3796969 3796945 65.95 44.2921.66 Both
chr19 10 2063215 2063128 His GTG ggttagtgcg gctctgtggg2063178 2063164 63.42 37.0126.41 Both
 
chr2 1 1253440 1253511 Cys GCA ggctcagcgc catttttctc0 0 77.71 58.4719.24 Both
chr2 2 1767322 1767394 Met CAT tggctccagg gctcttttag0 0 74.91 54.5520.36 Both
chr2 3 2288577 2288650 Asn GTT acgtgcccag cgacactttt0 0 82.62 59.7022.92 Both
chr2 4 2292449 2292522 Asn GTT gcgttcacga cgacgctttt0 0 82.62 59.7022.92 Both
chr2 5 2293311 2293384 Asn GTT gcgtttccag cgacgctttt0 0 82.62 59.7022.92 Both
chr2 6 4202381 4202453 Arg TCG gcgtccgtgt gctttttgtc0 0 70.52 51.5019.02 Both
chr2 7 4202664 4202735 Met CAT tacgtccgca ctgtcctatt0 0 68.98 40.9628.02 Both
chr2 8 4204125 4204196 Met CAT aacccgcgga agcatgcgtt0 0 68.98 40.9628.02 Both
chr2 9 5877463 5877556 Ile TAT cacgccgccg cttagctttt5877501 5877520 60.08 36.2123.87 Both
chr2 10 12584201 12584273 Arg ACG agctcctgca tagagttttg0 0 70.29 50.4119.88 Both
chr2 11 12586794 12586866 Arg ACG cccattgtga tagctttttt0 0 72.37 52.4919.88 Both
chr2 12 14890447 14890519 Lys TTT tcgcgccaga cagctctttt0 0 83.80 62.7821.02 Both
chr2 13 17224037 17224110 Ile AAT ctttgtatgt gatttatagc0 0 62.02 54.637.39 Eufind
chr2 14 18775459 18775540 Ser AGA atcattttgt ttgttatttt0 0 88.95 58.2530.70 Both
chr2 15 18776522 18776603 Ser AGA acccccacca gataatgctt0 0 88.95 58.2530.70 Both
chr2 16 18792634 18792715 Ser CGA atccgattgt gtgctttttt0 0 84.60 58.9625.64 Both
chr2 17 20964631 20964558 Ile AAT tcgggcgcgc cggttaaacc0 0 80.66 62.1718.49 Both
chr2 18 19413317 19413246 Gly TCC ttcccgcgtg atccagtttt0 0 76.62 55.6121.01 Both
chr2 19 19163458 19163386 Arg CCT cttcatcagt tgtgtaggct0 0 70.63 54.3916.24 Both
chr2 20 19136918 19136836 Leu CAG agaataacgt tgaaacattt0 0 75.90 46.8929.01 Both
chr2 21 19136622 19136540 Leu CAG acgagcagat tacagtagtc0 0 75.90 46.8929.01 Both
chr2 22 19136262 19136180 Leu CAG gataccacgt taaatgtttt0 0 75.90 46.8929.01 Both
chr2 23 18829154 18829073 Ser AGA cttctttcag tttatgctta0 0 48.42 33.1715.25 Both
chr2 24 17288123 17288051 Lys CTT cggatcccgt atcacatttt0 0 80.47 57.8122.66 Both
chr2 25 17274027 17273946 Leu AAG atgtatatat tggttttctt0 0 64.13 44.1519.98 Both
chr2 26 17117122 17117051 Met CAT tcaaagggtc ggcgctttct0 0 65.51 37.5028.01 Both
chr2 28 5572322 5572251 Arg CCT actacagcgc gaacaccttt0 0 58.78 47.7011.08 Eufind
chr2 29 4205746 4205675 Gln CTG acatctatgt tcctttttcg0 0 73.65 50.3623.29 Both
chr2 30 3522878 3522806 Arg CCT cgcctgaccg tcaaactttt0 0 70.63 54.3916.24 Both
chr2 31 908658 908588 Gly CCC ttcgtcatcg cgtagttttt0 0 76.98 51.0525.93 Both
 
chr20 1 3649029 3649100 Asp GTC ctcctcccgg ttcctttttg0 0 71.10 46.2124.89 Both
chr20 2 3649240 3649310 Gly GCC ccgagcgcga acacactttt0 0 81.62 61.5720.05 Both
chr20 3 1541995 1541914 Leu AAG cggcctccag ctactttttc0 0 69.84 50.1619.68 Both
chr20 4 770141 770069 Lys CTT aggccccaaa tgtttttgat0 0 80.47 57.8122.66 Both
 
chr21 1 1648816 1648888 Phe GAA aataacgggc gcactgcagg0 0 84.19 62.5821.61 Both
chr21 2 2163600 2163681 Ser TGA ggtcagcaga aggtggctct0 0 83.76 51.1632.60 Both
chr21 3 2658288 2658359 His GTG cttgtagccg gcttttctaa0 0 35.10 17.5617.54 Both
chr21 4 4863315 4863387 Val AAC gtcatcgcag tcttttcttt0 0 85.93 59.9725.96 Both
chr21 10 2658027 2657956 His GTG cacgcctgtg agccgctcgg0 0 61.58 35.5126.07 Both
chr21 11 2176447 2176375 Phe GAA gtggtcatgt gcatgtgggg0 0 79.39 60.7618.63 Both
chr21 12 2175790 2175718 Phe GAA gtggtcatgt gcatgtgggc0 0 79.39 60.7618.63 Both
 
chr21_random 2 26872 26943 Pro TGG gctgccctgc gctcttttgc0 0 76.15 54.0922.06 Both
chr21_random 5 3141771 3141843 Lys CTT atgacgtaag ttcattatta0 0 80.47 57.8122.66 Both
chr21_random 7 2209527 2209445 Leu TAA gtgcacacag cttcttatgt0 0 77.55 47.2930.26 Both
 
chr3 1 2933284 2933356 Met CAT tgcgttcacg gccgattttt0 0 79.46 59.1120.35 Both
chr3 2 10288491 10288564 Thr AGT agcgtcatcc tttggttatg0 0 82.80 62.4120.39 Both
chr3 4 12684670 12684741 Cys GCA gcctgcagtt atgcttttgc0 0 73.59 51.1322.46 Both
chr3 5 13555207 13555278 Cys GCA ctagcctcac ggagcctgca0 0 69.67 47.2122.46 Both
chr3 6 13556491 13556562 Cys GCA ctagcctcca gggcaccctg0 0 73.59 51.1322.46 Both
chr3 7 14128322 14128393 Cys GCA tccggacaca cttttccatt0 0 77.71 58.4719.24 Both
chr3 9 14623902 14623973 Thr CGT gacggtgcca tcgaggcgga0 0 79.77 59.8819.89 Both
chr3 10 15195040 15195121 Ser TGA ggttcccgcc aacacctttt0 0 89.16 62.7526.41 Both
chr3 11 14126172 14126101 Cys GCA gcctcccagc caagagtctt0 0 77.71 58.4719.24 Both
chr3 12 13579689 13579618 Cys GCA gttccagcac ggaccctaaa0 0 73.59 51.1322.46 Both
chr3 13 13562371 13562300 Cys GCA ctgcaggtgc gagccctttt0 0 73.59 51.1322.46 Both
chr3 14 13544491 13544420 Cys GCA gtaaagctgt ggccaccctg0 0 66.62 44.5922.03 Both
chr3 15 12434646 12434575 Thr CGT ccagagcgca tttggcctcg0 0 79.77 59.8819.89 Both
chr3 16 11266253 11266182 Gly CCC tggacagcag ggaaccagtg0 0 59.76 41.6718.09 Both
chr3 17 9875394 9875313 Leu TAG ggtgatcact aagccttttc0 0 68.14 45.5422.60 Both
chr3 18 9223362 9223289 Met CAT gtagcacgta ggttttttgg0 0 59.50 30.9128.59 Eufind
chr3 19 9223116 9223044 Met CAT ggattccatc tctttttttc0 0 58.47 31.4527.02 Eufind
chr3 22 6872211 6872140 Gln CTG gcctccacgc taaagttttc0 0 73.65 50.3623.29 Both
chr3 23 6870118 6870037 Ser CGA gagatccata actttttttt0 0 84.60 58.9625.64 Both
chr3 24 3551478 3551407 Gly GCC aaaacacttc agtaactttt0 0 59.04 53.055.99 Eufind
chr3 25 3538985 3538914 Asp GTC gctcatgtgc tagcaacttt0 0 71.60 47.0624.54 Both
chr3 26 2932488 2932416 Met CAT tgcgttcgcg gccgatgttt0 0 79.46 59.1120.35 Both
chr3 27 2921539 2921466 Ile AAT tggcacccac gttaaccttt0 0 80.66 62.1718.49 Both
 
chr4 2 2501627 2501698 Cys GCA aatgtcgacc aaacgttata0 0 73.59 51.1322.46 Both
chr4 9 3271176 3271103 Ile AAT tcgcgctcac gtcaacgttt0 0 80.66 62.1718.49 Both
 
chr5 1 1798345 1798417 Val AAC gagacacatg tggtatattt0 0 85.93 59.9725.96 Both
chr5 2 10855301 10855230 His GTG ccggtagctc gggatccgtc0 0 66.12 40.0426.08 Both
chr5 3 10627120 10627049 His GTG ccggtagctc gggactcgtt0 0 61.58 35.5126.07 Both
chr5 4 6738788 6738706 Leu AAG gcagggcgca caagcttttt0 0 79.60 49.2730.33 Both
chr5 5 2421261 2421190 His GTG atcgtagctc ttgtcagaca0 0 65.73 39.3126.42 Both
 
chr6 1 1601324 1601405 Leu TAG caaacgtgag ttatgttaga0 0 74.51 53.2721.24 Both
chr6 2 2362369 2362442 Thr AGT cgcacacacc tttggctact0 0 84.06 64.4519.61 Both
chr6 3 3404013 3404098 Tyr GTA gccacgtctc gactctcttt3404050 3404062 73.44 47.0326.41 Both
chr6 19 5201735 5201663 Arg CCG ttgaaaaaag tttatcttta0 0 67.33 51.6915.64 Both
 
chr7 1 3440155 3440236 Leu AAG ttccacatgt taagcttctt0 0 68.83 46.8222.01 Both
chr7 2 3536748 3536819 Trp CCA gccgccagcc acttttatgg0 0 74.00 52.2121.79 Both
chr7 3 8253086 8253159 Thr AGT gacatcatcc tttgttttcc0 0 84.06 64.4519.61 Both
chr7 4 8314054 8314125 Trp CCA cggaagcgcc cttcttatgc0 0 74.00 52.2121.79 Both
chr7 5 10231848 10231929 Ser GCT cggtggcagc gtccgaattt0 0 85.34 57.7727.57 Both
chr7 6 10313399 10313470 Asp GTC ttatatgtag tgcaacgctt0 0 71.60 47.0624.54 Both
chr7 7 10384265 10384336 Ala CGC ttccttatgt cctttttgtt0 0 73.07 49.4923.58 Both
chr7 9 10820051 10820132 Ser GCT tcaccagaag tacttttagg0 0 77.23 49.6627.57 Both
chr7 10 10820542 10820623 Ser GCT tcaagcagga tacttttagg0 0 77.23 49.6627.57 Both
chr7 11 10821026 10821107 Ser GCT caccggagag tagctttagg0 0 77.23 49.6627.57 Both
chr7 12 10855947 10856055 Leu CAA cagacatcgt ctaccttttt10855985 10856009 63.67 42.7420.93 Both
chr7 13 10879278 10879350 Val TAC acgggcgcgt gctgactgct0 0 76.74 55.4121.33 Both
chr7 14 10923795 10923866 Ala TGC cgctccacca ctcgtttttt0 0 72.71 49.1223.59 Both
chr7 15 11612219 11612291 Val CAC tgacgtcagc gggttgcctt0 0 87.39 62.2025.19 Both
chr7 16 11616892 11616964 Val CAC tgacgtcagc ggtttttatt0 0 87.39 62.2025.19 Both
chr7 17 11621498 11621570 Val CAC tgacgtcagc ggttttcatt0 0 87.39 62.2025.19 Both
chr7 18 11649444 11649516 Ala AGC gggttccgac gctgcttttg0 0 63.68 41.0222.66 Both
chr7 19 11654959 11654887 Val CAC gacctccagc ggttttcgtt0 0 87.39 62.2025.19 Both
chr7 20 11654558 11654487 Asp GTC gtcagcccag tgctggctat0 0 72.92 48.3824.54 Both
chr7 21 11591579 11591507 Val AAC cctcgcgcag gcaatgtttt0 0 85.93 59.9725.96 Both
chr7 22 11312149 11312068 Ser GCT agctgtcacg ctccttcttg0 0 66.32 44.3621.96 Both
chr7 24 10669556 10669485 Trp CCA gccgtcccga aacttttctg0 0 74.00 52.2121.79 Both
chr7 25 10665427 10665355 Val CAC cgtcgcacag cattattatt0 0 87.39 62.2025.19 Both
chr7 26 10665170 10665099 Asp GTC gttaccacct gttacatctt0 0 71.60 47.0624.54 Both
chr7 27 10392364 10392293 Leu CAG gtgtgacagc acagcagctc0 0 48.68 20.6628.02 Both
chr7 28 10384691 10384619 Val TAC gccactcggc gtagcgtttt0 0 82.67 57.6325.04 Both
chr7 29 10240766 10240685 Ser GCT accaccgcag ctcctttctt0 0 75.98 46.5429.44 Both
chr7 30 10240516 10240435 Ser GCT tctcacacaa caggtttgag0 0 80.81 53.2327.58 Both
chr7 31 7811194 7811109 Tyr GTA cgggaggcat ctgttttgat7811157 7811145 76.41 50.0026.41 Both
chr7 32 3111460 3111388 Glu TTC ctgcacgagc agcactcctt0 0 62.82 41.9420.88 Eufind
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chr8 1 4363322 4363393 Glu CTC gatgttgcag ctcggttttt0 0 76.61 53.9422.67 Both
chr8 3 8978945 8979018 Lys CTT gagcgcgcag catgactttt0 0 70.22 53.1217.10 Eufind
chr8 4 7525630 7525558 Thr TGT cgtgctgacg tcctttcttt0 0 77.05 56.0720.98 Both
chr8 5 7523640 7523568 Thr TGT gggcgcgcca tcctttagac0 0 77.05 56.0720.98 Both
 
chr9 1 1367658 1367729 Met CAT gcgcagcagc ggtcaccttt0 0 68.98 40.9628.02 Both
chr9 2 1368022 1368093 Met CAT tgcaggcagc gacgttttat0 0 68.98 40.9628.02 Both
chr9 3 6793523 6793595 Arg ACG tcacagcaga cacctttttg0 0 68.07 51.1816.89 Both
chr9 4 9162308 9162237 Glu CTC ggtccccgtg cacctgcttt0 0 76.61 53.9422.67 Both
chr9 5 7465189 7465117 Lys CTT tgctaccagc gttcagcttt0 0 80.47 57.8122.66 Both
chr9 6 5365438 5365367 Ala TGC cccgtcggac cacttttttt0 0 72.71 49.1223.59 Both
chr9 7 4530287 4530216 His GTG tcggtagctc gggatagaac0 0 64.03 37.9626.07 Both
chr9 8 4528641 4528569 Phe GAA accttcgccc ttttgctgtc0 0 84.19 62.5821.61 Both
 
chrUn_random 1 701493 701571 Undet ??? tcccagacag cctacaaagc0 0 58.62 41.2017.42 Eufind
chrUn_random 2 1318699 1318772 Asn GTT accgtcagca gttgcatttt0 0 82.62 59.7022.92 Both
chrUn_random 3 1318972 1319045 Asn GTT gccgtccgag cgagaccttt0 0 82.62 59.7022.92 Both
chrUn_random 4 1319406 1319479 Asn GTT agcatccaaa cgagaccttt0 0 82.62 59.7022.92 Both
chrUn_random 5 1324128 1324201 Asn GTT ttctacgtca caagaccttt0 0 82.62 59.7022.92 Both
chrUn_random 6 2052303 2052374 Gln TTG gtggccccga tgaccctttt0 0 68.59 51.0817.51 Both
chrUn_random 7 3523826 3523897 Pro AGG cactttgcgt gttctttttt0 0 75.92 53.8522.07 Both
chrUn_random 8 4899290 4899362 Arg ACG ccccccatca tctctgcttt0 0 68.33 51.3117.02 Both
chrUn_random 9 6151285 6151356 Gln CTG gtcgctaact tgggttttct0 0 73.65 50.3623.29 Both
chrUn_random 11 9801171 9801242 Pro CGG gcacccgtaa tctctctttc0 0 76.52 54.4622.06 Both
chrUn_random 12 9920173 9920244 Glu TTC aagcaaacag gtcattttta0 0 71.05 52.5218.53 Both
chrUn_random 14 14672887 14672958 Gln CTG gttttcccgc ttgtttgcat0 0 73.65 50.3623.29 Both
chrUn_random 15 14673143 14673216 Ile AAT tgtcgtcatt tgcagccttt0 0 80.66 62.1718.49 Both
chrUn_random 16 15863239 15863313 Thr AGT tcccaaacaa ttggaaaaga0 0 72.44 51.0821.36 Eufind
chrUn_random 17 15876430 15876502 Ala AGC caacaggaga gtgagattct0 0 58.87 34.3824.49 Both
chrUn_random 21 26470176 26470248 Val AAC cctgcctgca ctttagctgc0 0 81.51 55.2626.25 Both
chrUn_random 22 26470684 26470755 His GTG agctcacacg tcttttttcc0 0 58.75 46.1912.56 Both
chrUn_random 23 26472065 26472136 Asp GTC agctcacaca tctttttccc0 0 53.05 44.518.54 Both
chrUn_random 24 26472827 26472897 Gly GCC tgcctcttgt acagttgttt0 0 68.72 57.4511.27 Both
chrUn_random 25 26473002 26473074 Val CAC tccacctctt gtttgcctac0 0 64.72 50.1914.53 Eufind
chrUn_random 26 26473845 26473918 Undet ??? cccgtcagca ctttagctgc0 0 61.63 47.6014.03 Eufind
chrUn_random 27 26474354 26474425 Asp GTC agctcccacg tctttttttt0 0 55.74 43.5512.19 Both
chrUn_random 28 26492955 26493027 Val AAC cctgtcagca ctttagctgc0 0 83.25 56.9926.26 Both
chrUn_random 30 27037662 27037734 Arg CCT cagcagcgcc ttcgcttttt0 0 70.63 54.3916.24 Both
chrUn_random 34 35754536 35754607 Gly GCC cgctcgtgca acacactttt0 0 71.38 53.2318.15 Eufind
chrUn_random 35 35761688 35761758 Gly GCC cgctcgtgca acacactttt0 0 81.62 61.5720.05 Both
chrUn_random 36 37036662 37036734 Ala AGC gcgtcagatc gcaagatgct0 0 44.36 31.9512.41 Both
chrUn_random 41 40377545 40377616 Glu TTC aagcaaccag gtcattttta0 0 67.54 48.3719.17 Both
chrUn_random 43 40650514 40650586 Ala TGC ccgtcagaaa gtgagatgtt0 0 55.85 37.1218.73 Both
chrUn_random 45 41131695 41131777 Leu CAG tttcccatgt tgttaacagt0 0 75.90 46.8929.01 Both
chrUn_random 46 41255964 41256037 Thr AGT ttcccaaaca ttggaaaaga0 0 79.47 56.8922.58 Both
chrUn_random 47 41311088 41311159 Pro CGG atctccgcct ccattgtctc0 0 68.88 50.1218.76 Both
chrUn_random 52 41552180 41552252 Ala AGC acatcaggaa gagagatgct0 0 58.22 36.8721.35 Both
chrUn_random 54 41632909 41632989 Ser TGA tcagcactgt tagctccgtt0 0 68.96 50.7818.18 Both
chrUn_random 55 41684620 41684691 Pro CGG ttctctgcct ccattgtctc0 0 70.88 52.6218.26 Both
chrUn_random 58 42194601 42194672 Leu CAG gtgtgacagc acagcagctc0 0 51.95 23.9428.01 Both
chrUn_random 59 42225970 42226041 Pro TGG agtaccacac tcatgatctc0 0 58.29 44.9413.35 tRNAscan
chrUn_random 60 42343273 42343344 Leu CAG gtgtgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 61 42372557 42372628 Glu TTC aagcaaccag gnnnnnnnnn0 0 65.31 43.1622.15 Both
chrUn_random 63 43938161 43938233 Thr TGT cggcagcagc cgaactcttt0 0 79.46 56.9222.54 Both
chrUn_random 64 44593202 44593284 Leu AAG tctcccatgt tgttaacagt0 0 61.09 37.4323.66 Both
chrUn_random 65 44957963 44958054 Arg TCT gaggcccgca gcttttgatg44958000 44958018 56.51 36.0620.45 Both
chrUn_random 66 45009766 45009839 Thr AGT ttcccaaaca ttggaaaaaa0 0 79.47 56.8922.58 Both
chrUn_random 67 45153104 45153175 Pro TGG ggtaccgcac ttatgatctt0 0 68.23 46.1722.06 tRNAscan
chrUn_random 70 45542517 45542601 Tyr GTA tgggctacac caccttttgc45542554 45542565 72.13 45.7226.41 Both
chrUn_random 71 45542875 45542959 Tyr GTA gggcacagaa cagctttttg45542912 45542923 72.13 45.7226.41 Both
chrUn_random 72 45543403 45543487 Tyr GTA tgatttacac cattttacct45543440 45543451 72.40 45.9926.41 Both
chrUn_random 73 45881577 45881647 Gly GCC aggctctcgt acactggttt0 0 81.62 61.5720.05 Both
chrUn_random 74 45881754 45881826 Val CAC tccatgtctt gtttttctgt0 0 65.85 55.919.94 Both
chrUn_random 76 47695882 47695964 Leu CAG tctcccatgt tgttaacagt0 0 75.90 46.8929.01 Both
chrUn_random 77 47701790 47701861 Met CAT gtctgacagc acaggagctc0 0 61.88 33.8728.01 Both
chrUn_random 78 47705738 47705809 Thr CGT tctaaacatg ttaaggagag0 0 61.12 40.1320.99 Both
chrUn_random 79 47709849 47709931 Leu CAG tctcctgtgt tgttaacagt0 0 41.07 28.9012.17 Both
chrUn_random 80 48594938 48595008 Gly GCC agtttctcgt acttttttgc0 0 81.62 61.5720.05 Both
chrUn_random 81 48595105 48595179 Gly CCC tccacgtcct gtttttctgt0 0 52.18 40.2811.90 Both
chrUn_random 82 48747790 48747861 Glu CTC accccaccga agtttgtgtg0 0 61.73 46.7015.03 Both
chrUn_random 83 48893391 48893464 Thr AGT tcccaaaaca ttggaaaaga0 0 79.47 56.8922.58 Both
chrUn_random 84 48949593 48949674 Phe AAA aacttagtgt cagctgtgtg0 0 64.53 42.0122.52 Both
chrUn_random 85 49234037 49234108 Leu CAG gtgtgacagc acagcagctc0 0 43.38 19.7323.65 Both
chrUn_random 87 49462546 49462627 Ser TGA tctgcactgt tagctcaatt0 0 75.04 54.7420.30 Both
chrUn_random 89 49702670 49702740 Gly GCC agcctctcct acagttgctt0 0 68.24 59.009.24 Both
chrUn_random 90 49702845 49702917 Val CAC tctgtgtctt gttggcctat0 0 87.19 61.8425.35 Both
chrUn_random 92 50010082 50010155 Ile AAT gctttttcac tttgaagcat0 0 69.05 38.1430.91 Both
chrUn_random 95 50807979 50808050 Gly TCC attctgcgcc acaaaggtct0 0 69.12 48.1221.00 Both
chrUn_random 98 51141156 51141228 Val AAC cccgcctgca ctttagctgc0 0 74.86 50.8923.97 Both
chrUn_random 99 51141664 51141735 Asp GTC agctcacacg tctttttttc0 0 59.72 47.1612.56 Both
chrUn_random 101 51416190 51416262 Thr TGT cggcagcagc cgaactcttt0 0 71.54 48.9922.55 Both
chrUn_random 102 51546330 51546401 Leu CAG gtgtgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 103 52301616 52301687 Trp CCA aaaacacaag gggcctttta0 0 59.37 44.2715.10 Both
chrUn_random 104 53468619 53468690 Gln TTG agccagctgt gcttttgata0 0 73.24 48.5824.66 Both
chrUn_random 105 53468946 53469017 Gln CTG acccagctgt gctttgagca0 0 60.73 36.0724.66 Both
chrUn_random 106 53469597 53469668 Gln CTG ttctagctgt acttttgata0 0 72.15 47.4924.66 Both
chrUn_random 107 53469940 53470011 Gln CTG gaccagttgt gcttttgata0 0 72.15 47.4924.66 Both
chrUn_random 108 53470498 53470569 Gln CTG gcccagctat gcttttgata0 0 72.15 47.4924.66 Both
chrUn_random 109 53478711 53478782 Gln TTG agccagctgt gcttttgata0 0 73.24 48.5824.66 Both
chrUn_random 110 53480011 53480082 Gln CTG ttctagctgt gcttttgata0 0 72.15 47.4924.66 Both
chrUn_random 111 53480354 53480425 Gln CTG gaccagttgt gcttttgata0 0 72.15 47.4924.66 Both
chrUn_random 112 53480911 53480982 Gln CTG gcccagctgt ccttttgata0 0 72.15 47.4924.66 Both
chrUn_random 113 53481591 53481662 Gln TTG agccagctgt gcttttgata0 0 73.24 48.5824.66 Both
chrUn_random 115 55555906 55555979 Thr AGT tcctaaaaaa ttggaaaaga0 0 60.56 46.0014.56 Both
chrUn_random 116 55630489 55630560 Leu CAG gtgtgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 117 56102605 56102678 Thr AGT tcccagaaga ttggaaaaga0 0 69.14 52.0617.08 Both
chrUn_random 118 56249984 56250077 Ile TAT gtaccgcggg actactttta56250022 56250041 68.23 40.0428.19 Both
chrUn_random 119 56796175 56796254 Leu TAG gttgttgtgt gtagttttgg0 0 70.09 46.8123.28 Both
chrUn_random 120 56826651 56826732 Ser AGA agcttagtgt cagctgtgtg0 0 74.74 50.2324.51 Both
chrUn_random 121 57295528 57295600 Arg CCT cagtggcgcc ctgagctttt0 0 70.63 54.3916.24 Both
chrUn_random 122 57641904 57641986 Leu AAG tttcccatgt tgttaacagt0 0 75.30 46.2929.01 Both
chrUn_random 123 57814947 57815018 Gln CTG acccagctgt gcttttgaaa0 0 73.61 48.9424.67 Both
chrUn_random 124 57815548 57815619 Gln CTG acccagttct gcttttggca0 0 72.15 47.4924.66 Both
chrUn_random 125 57817190 57817261 Gln CTG acccagttgt gcttttggca0 0 72.15 47.4924.66 Both
chrUn_random 126 57818590 57818661 Gln TTG agccagctgt acttttgata0 0 73.24 48.5824.66 Both
chrUn_random 130 59713461 59713533 Val AAC cctgcctgca ccttttgctg0 0 82.07 58.5923.48 Both
chrUn_random 131 61895905 61895976 His GTG ccgctagctc ggcaccagcc0 0 64.03 37.9626.07 Both
chrUn_random 133 62009526 62009599 Thr AGT ttcccaaaca ttggaaaaga0 0 73.96 51.3822.58 Both
chrUn_random 136 62267461 62267532 Asp GTC cgctcccacg tctttttttt0 0 71.10 46.2124.89 Both
chrUn_random 137 62269959 62270032 Ile AAT tgcctttcaa tttggaggac0 0 70.98 44.4126.57 Both
chrUn_random 139 62585071 62585143 Lys CTT tgtcagaggt tagctctttt0 0 80.47 57.8122.66 Both
chrUn_random 140 62587865 62587937 Lys CTT tgtagcaggt tagctctttt0 0 80.47 57.8122.66 Both
chrUn_random 141 62589186 62589258 Lys CTT tgtaggagtt tagatctttt0 0 78.73 56.0722.66 Both
chrUn_random 142 62590008 62590080 Lys CTT ttccagaggt tagctctttt0 0 72.66 55.6317.03 Both
chrUn_random 145 63391431 63391503 Phe GAA gtcaatcgta tttcatgctt0 0 73.16 54.6918.47 Both
chrUn_random 147 64807360 64807431 Thr CGT tctaaacgtg ttaaggagag0 0 62.02 42.5919.43 Both
chrUn_random 148 65012772 65012843 Gly TCC attctgcgct acaaaggtct0 0 73.04 52.0321.01 Both
chrUn_random 149 65013104 65013175 Gly TCC acccagctga tttaaacata0 0 59.03 43.5715.46 Eufind
chrUn_random 150 65013431 65013502 Gly TCC cttcccttgt acaaaggtct0 0 62.43 47.0915.34 Both
chrUn_random 151 65637493 65637565 Ala TGC ttctcagaag gtgagaagcg0 0 45.43 27.4917.94 Both
chrUn_random 152 65764983 65765054 Thr CGT cctaaatgtg ttaaggagtg0 0 61.98 40.0521.93 Both
chrUn_random 153 65868088 65868159 Glu TTC aagcaaccag gtcattttta0 0 70.36 51.1919.17 Both
chrUn_random 154 67596484 67596556 Val CAC tgacgtcagc ggttttcatt0 0 87.39 62.2025.19 Both
chrUn_random 155 68877709 68877780 Thr TGT caataaccaa caaaaaggaa0 0 49.57 26.9622.61 Both
chrUn_random 156 68881425 68881498 Leu TAA aacatgacat atgattacaa0 0 35.56 10.3725.19 Both
chrUn_random 157 70328655 70328737 Leu CAG ttatagccat ttgtgcctgt0 0 64.33 40.5423.79 Both
chrUn_random 159 70690167 70690240 Thr AGT ccccaaacaa ttggaaaaga0 0 81.36 58.7822.58 Both
chrUn_random 161 71633578 71633649 Leu CAG gtgtgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 163 73266493 73266565 Ala TGC tcctcagaaa gtgagatgtt0 0 46.95 26.2220.73 Both
chrUn_random 165 73268883 73268956 Thr AGT nnnnnnaaaa ttggaaaaga0 0 67.44 52.8714.57 Both
chrUn_random 166 73272802 73272875 Thr AGT tccacaaagt ttggaaaaga0 0 55.57 42.1013.47 Eufind
chrUn_random 168 73735397 73735470 Ile AAT caatgttcat tttgaagcac0 0 64.86 38.4826.38 Both
chrUn_random 169 74823109 74823182 Arg TCT tgttggcgca agccgcgctg0 0 72.95 53.6419.31 Both
chrUn_random 171 75757255 75757327 Lys TTT cagactcaca agtgttgctt0 0 76.67 59.0117.66 Both
chrUn_random 172 75762556 75762627 Pro AGG cagcccacat acgttacctt0 0 61.01 44.6216.39 Both
chrUn_random 173 75764013 75764094 Ser TGA tctgcactgt tagctcaatt0 0 81.89 53.4028.49 Both
chrUn_random 174 75765580 75765652 Ala AGC ctgtaggaga gtgagatgct0 0 51.88 32.9818.90 Both
chrUn_random 175 75767722 75767804 Leu AAG tctcccatgt tgttaacagt0 0 75.30 46.2929.01 Both
chrUn_random 177 76998420 76998493 Thr AGT tccctaaaca ttggaaaaga0 0 79.47 56.8922.58 Both
chrUn_random 180 81550292 81550363 Glu TTC acacaaccag gttgttttta0 0 57.15 37.9919.16 Both
chrUn_random 181 82236977 82237049 Arg TCG agtgacgcca agtatttgta0 0 64.06 43.1820.88 Both
chrUn_random 182 82259614 82259696 Leu AAG tctcccatgt tgttaacggt0 0 67.76 38.7429.02 Both
chrUn_random 183 82727900 82727971 Pro AGG catcccgcat atattacctt0 0 71.61 52.5419.07 Both
chrUn_random 184 83012497 83012570 Thr AGT ttctcaaaca ttggaaaaga0 0 77.66 55.0822.58 Both
chrUn_random 185 83139872 83139943 Leu CAG gtctgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 186 83518179 83518251 Ala AGC ctgtaggaga gtgagattct0 0 51.08 26.7924.29 Both
chrUn_random 189 83777708 83777778 Gly GCC aggctctcgt acactgattt0 0 74.64 60.2614.38 Both
chrUn_random 190 83777885 83777959 Gly CCC tccacgtcct gtttttctgt0 0 58.29 46.6611.63 Eufind
chrUn_random 192 84742578 84742647 Met CAT ttgttcccca gctcttttag0 0 56.60 41.0415.56 Eufind
chrUn_random 193 84806021 84806092 Ala CGC attgaccaat accttaaagt0 0 72.92 53.1419.78 Both
chrUn_random 195 86581134 86581215 Ser AGA cggcagcctg caacaagctt0 0 88.95 58.2530.70 Both
chrUn_random 202 89656351 89656422 Gly TCC cgtctgcgcc acaaagggtt0 0 73.04 52.0321.01 Both
chrUn_random 205 90289025 90289096 Trp CCA gaaacccgcc tgcacttttg0 0 69.91 48.1121.80 Both
chrUn_random 206 90292365 90292436 Trp CCA ggagcaacag aagatttttg0 0 74.00 52.2121.79 Both
chrUn_random 207 91991569 91991640 Gly TCC aagaggacaa tgcattttaa0 0 75.34 53.5421.80 Both
chrUn_random 208 92051346 92051418 Ala AGC ttgtaggaga gtcagatgct0 0 51.03 32.4618.57 Both
chrUn_random 209 92884553 92884626 Thr AGT gctggtggcc tcgctgaggg0 0 84.06 64.4519.61 Both
chrUn_random 211 102090535 102090616 Ser AGA ccgaccgtca tttttcacca0 0 88.95 58.2530.70 Both
chrUn_random 212 105135271 105135353 Leu CAG cgctacacat ataacttttc0 0 75.90 46.8929.01 Both
chrUn_random 217 107381388 107381461 Asn GTT agaacacaga ggagcaacct0 0 60.01 36.4323.58 Both
chrUn_random 218 107705877 107705767 Leu CAA gggccgtgtt agcttttgtt107705839 107705813 63.53 41.2722.26 Both
chrUn_random 219 107410416 107410342 Lys CTT gagctccaag cagcaagctt0 0 59.45 41.7117.74 Eufind
chrUn_random 220 105453806 105453733 Ile AAT tttttttcac tttgaagcac0 0 69.05 38.1430.91 Both
chrUn_random 227 95639772 95639679 Ile TAT cgcagcccgg catttttata95639734 95639715 69.25 41.0528.20 Both
chrUn_random 228 95182654 95182581 Asn GTT ttcgatacct cgatgccttt0 0 71.20 49.0722.13 Both
chrUn_random 229 94669570 94669477 Ile TAT tgtcccttgt ccaccagtaa94669532 94669513 45.50 35.4310.07 Both
chrUn_random 230 92362923 92362852 Gly TCC cgtgcacgcc ggcatttctt0 0 76.83 56.4020.43 Both
chrUn_random 231 91604557 91604485 Val CAC aacgtcatcg cactgtttaa0 0 87.39 62.2025.19 Both
chrUn_random 232 91149811 91149740 Gly TCC atccagctgt tttcaccttt0 0 73.04 52.0321.01 Both
chrUn_random 233 91149276 91149205 Gly TCC tcttcccgtc gttaaattca0 0 73.04 52.0321.01 Both
chrUn_random 234 90311214 90311143 Trp CCA gggtcgctca tttgttttca0 0 74.00 52.2121.79 Both
chrUn_random 238 88602873 88602792 Ser AGA aacttagcgt cagctgtgtg0 0 59.29 43.7315.56 Both
chrUn_random 239 87833234 87833162 Lys TTT cagacttaca agtgctgctt0 0 79.82 58.8221.00 Both
chrUn_random 240 84797646 84797558 Arg TCT tgcaacaggt catttttcga84797609 84797594 71.63 51.9619.67 Both
chrUn_random 241 84629629 84629557 Val CAC tgacgtcagc ggttttcatt0 0 87.39 62.2025.19 Both
chrUn_random 247 82506695 82506613 Leu CAG tctcccatgt tgttaacagt0 0 67.58 42.8424.74 Both
chrUn_random 248 82258592 82258521 Leu CAG gtgtgacagc atgggaactg0 0 50.66 22.6428.02 Both
chrUn_random 249 79534129 79534058 Thr CGT gctatacgtg ttaaggagag0 0 72.51 45.1627.35 Both
chrUn_random 251 77539413 77539332 Ser AGA tgtcaacact tagctgtgcg0 0 69.36 51.3418.02 Both
chrUn_random 252 76143019 76142948 Met CAT cttaaacgtg ctagcccggc0 0 50.67 29.0921.58 Both
chrUn_random 254 75767473 75767402 Pro TGG agtaccgcac tcatgatctc0 0 63.49 44.6918.80 tRNAscan
chrUn_random 255 75758276 75758204 Ala TGC gcagcagaga gtgagaagct0 0 57.22 32.8924.33 Both
chrUn_random 256 73911373 73911300 Thr AGT tcccaaaaga ttggaaaaga0 0 64.86 47.7717.09 Both
chrUn_random 259 73270460 73270388 Phe GAA tgttttcata cttcatttgt0 0 58.31 43.4914.82 Eufind
chrUn_random 260 71627010 71626928 Leu CAG ttatacccat ttgtccctat0 0 64.33 40.5423.79 Both
chrUn_random 262 71626018 71625946 Ala AGC atgtcaggaa gagagatgct0 0 55.24 30.9124.33 Both
chrUn_random 265 67083699 67083628 Leu CAG gtgtgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 266 65430769 65430688 Leu AAG gcgttagcat gaacattttt0 0 69.84 50.1619.68 Both
chrUn_random 268 64809357 64809286 Thr CGT tctaaacgtg ttaaggagag0 0 62.94 41.7521.19 Both
chrUn_random 271 63144892 63144812 Leu TAG ttttttgcat acgtgcctgt0 0 59.88 37.6022.28 Both
chrUn_random 273 62274699 62274627 Phe GAA gtcactcata tttcatgctt0 0 79.38 56.2823.10 Both
chrUn_random 274 62258958 62258887 Glu CTC acgcccccga agtttgtacg0 0 73.03 48.9924.04 Both
chrUn_random 276 61909345 61909273 Met CAT tgcgtccacg gctcttttag0 0 78.10 54.9723.13 Both
chrUn_random 277 61738576 61738495 Ser AGA cttttagcgt cagctgtgtg0 0 62.79 53.449.35 Both
chrUn_random 279 61527026 61526955 Thr CGT tctaaacgtg ttaaggagag0 0 55.01 35.8219.19 tRNAscan
chrUn_random 282 60655282 60655209 Thr AGT tcccaaaaca ttggaaaaga0 0 75.15 50.6624.49 Both
chrUn_random 283 60115329 60115258 Glu TTC aaataaccag gtcattttta0 0 61.42 39.2622.16 Both
chrUn_random 284 57576617 57576546 Met CAT gtctgacagt acagcagctc0 0 64.33 36.3228.01 Both
chrUn_random 285 57572621 57572550 Leu CAG gtgtgacagt acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 287 56822516 56822445 Pro GGG aaatcaacat acattgaaac0 0 52.70 44.398.31 Both
chrUn_random 288 56820321 56820239 Leu CAG tctcccatgt tgttaacagt0 0 63.15 38.9624.19 Both
chrUn_random 290 56009749 56009667 Leu CAG tttcccatgt tgttaacagt0 0 67.38 43.9823.40 Both
chrUn_random 291 55749463 55749390 Thr AGT tctcaaaaga ttggaaaaga0 0 77.51 57.1720.34 Both
chrUn_random 293 54653821 54653748 Thr CGT tcccaaaaga ttggaaaaga0 0 78.11 57.7720.34 Both
chrUn_random 296 51997571 51997500 Leu CAG gtctgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 297 51712655 51712585 Gly GCC agcctctcct acagttgctt0 0 67.53 58.309.23 Both
chrUn_random 298 51712480 51712408 Val CAC tctgtgtctt gtttgcctat0 0 82.55 61.7020.85 Both
chrUn_random 299 51711824 51711752 Val CAC cctgcctgca ctttagctga0 0 81.58 56.6524.93 Both
chrUn_random 301 51139123 51139053 Asp GTC agctcacacg tctttttttt0 0 53.77 36.5517.22 Both
chrUn_random 302 51046798 51046726 Ala AGC gcgtcagatc gcaagatgct0 0 44.36 31.9512.41 Both
chrUn_random 303 50740070 50739997 Thr AGT gctggtcccc tcgctgaggg0 0 84.06 64.4519.61 Both
chrUn_random 304 50725752 50725681 Leu CAG gtgtgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 306 50067473 50067400 Ile AAT tttttttcac tttgaagcac0 0 69.05 38.1430.91 Both
chrUn_random 307 50066957 50066886 Pro AGG tgagccacat acattacctt0 0 58.03 44.6313.40 Both
chrUn_random 310 49249586 49249515 Pro AGG tcatccccat tcattatctc0 0 63.94 49.8614.08 Both
chrUn_random 313 48997204 48997133 Thr CGT tctaaacgtg ttcaggaggt0 0 65.19 40.1425.05 Both
chrUn_random 314 48750641 48750559 Leu CAG ttatacccat ttgtgcctgt0 0 43.34 20.6122.73 Both
chrUn_random 315 48598704 48598634 Gly GCC aggctctcgc acactggttt0 0 71.89 54.8317.06 Both
chrUn_random 316 48598527 48598455 Val CAC tccatgtctc gtttttctgt0 0 69.05 59.079.98 Both
chrUn_random 317 48597917 48597845 Val AAC cccgcctgca ctttagctgc0 0 83.25 56.9926.26 Both
chrUn_random 318 48526820 48526749 Pro TGG cggtagtcac tcatgatctc0 0 59.28 42.5316.75 tRNAscan
chrUn_random 319 47581404 47581333 Glu CTC atacacacct cttcctcttt0 0 64.76 51.4813.28 Eufind
chrUn_random 321 46924840 46924768 Ile AAT cgaccgccac ctgttttcca0 0 72.60 52.1920.41 Eufind
chrUn_random 323 45799779 45799709 Gly GCC aggctctcgc acactggttt0 0 73.80 60.2913.51 Both
chrUn_random 324 45798699 45798627 Val AAC cccgcctgca ctttagctgc0 0 77.93 57.9220.01 Eufind
chrUn_random 326 45152854 45152772 Leu AAG tctcccatgt tgttaacagt0 0 72.74 43.7229.02 Both
chrUn_random 328 45008593 45008521 Ala TGC tgcccagaaa gtgagatgtt0 0 61.81 37.3224.49 Both
chrUn_random 329 45008198 45008127 Pro TGG ggtaccacac tcatgatctc0 0 62.28 45.9816.30 tRNAscan
chrUn_random 330 43629103 43629031 Thr TGT cggcagcagc cgaactcttt0 0 79.46 56.9222.54 Both
chrUn_random 331 43355830 43355760 Gly CCC gtacaccatg cttaagtttt0 0 68.47 51.0217.45 Both
chrUn_random 332 43217330 43217258 Phe GAA agcactcgta ttccatgctt0 0 58.38 44.4813.90 Eufind
chrUn_random 333 42224424 42224353 Asp GTC agctcccacg actttttccc0 0 59.82 41.8417.98 Both
chrUn_random 334 42223920 42223850 Gly GCC aggctctcgt acactggttt0 0 81.62 61.5720.05 Both
chrUn_random 336 41760097 41760026 Asp GTC agctcacacg tctttttttt0 0 60.12 44.6315.49 Both
chrUn_random 337 41758250 41758180 Gly GCC aggctctcgt acactggttt0 0 81.62 61.5720.05 Both
chrUn_random 338 41758073 41758001 Val CAC tccctacgtc gtttttctgt0 0 60.13 47.3012.83 Both
chrUn_random 339 41549518 41549436 Leu TAG tgttgtgcgt acgtgcctgt0 0 58.86 38.5920.27 Both
chrUn_random 341 41026036 41025963 Asp GTC agaacacaga tgagcaacct0 0 56.44 26.8229.62 Both
chrUn_random 342 40561577 40561506 Leu CAG gtgtgacagc acagcagctc0 0 48.68 20.6628.02 Both
chrUn_random 343 40499402 40499330 Ala AGC acaaggggaa gagagatgct0 0 50.80 35.2815.52 Both
chrUn_random 344 40178026 40177955 Trp CCA agaagcagct actttccctg0 0 58.43 39.1019.33 Eufind
chrUn_random 345 38796425 38796354 Glu TTC aagcaaccag gtcattttta0 0 52.76 40.6312.13 Both
chrUn_random 346 38788233 38788162 Glu TTC agcaaaccag gtcattctta0 0 52.76 40.6312.13 Both
chrUn_random 348 34648236 34648165 Pro AGG ggacacgcgt tgttaatccc0 0 75.92 53.8522.07 Both
chrUn_random 349 34647485 34647414 Pro AGG ggacccccgc cgtctgtttt0 0 75.92 53.8522.07 Both
chrUn_random 350 34414721 34414640 Ser AGA tgtgggcggg ggccatgttt0 0 88.95 58.2530.70 Both
chrUn_random 353 31163576 31163505 Cys GCA tgtttgaaat ttaaataata0 0 55.74 37.1718.57 Eufind
chrUn_random 354 29400254 29400182 Lys CTT tagaacttaa caggttatgc0 0 67.18 42.1425.04 Both
chrUn_random 355 28036367 28036295 Arg ACG gtgctcggga actttttaat0 0 68.07 51.1816.89 Both
chrUn_random 356 28034290 28034218 Arg ACG gccctctgtc catttttaat0 0 68.07 51.1816.89 Both
chrUn_random 357 28032857 28032786 Asp GTC cccgcgcctc tttccttttc0 0 71.10 46.2124.89 Both
chrUn_random 358 24195650 24195562 Arg TCT acgagcaggc cacttttctt24195613 24195598 68.82 49.1519.67 Both
chrUn_random 363 15852218 15852137 Ser AGA aacttagtgt cagctgtgtg0 0 59.14 45.4313.71 Both
chrUn_random 364 9919589 9919516 Asn GTT agaacacaga tgagcgacct0 0 65.44 40.4624.98 Both
chrUn_random 365 9884322 9884253 Lys TTT ttgttcccca agttctgctt0 0 55.74 43.4612.28 Eufind
chrUn_random 366 8729892 8729805 Tyr GTA gaccgcgctc ggagacactg8729855 8729841 76.57 50.1626.41 Both
chrUn_random 367 4731699 4731606 Ile TAT gggactcacg ctccttttaa4731661 4731642 66.19 37.9928.20 Both
chrUn_random 368 1368346 1368265 Ser GCT gagtgcacgc tttttcgttt0 0 85.34 57.7727.57 Both
chrUn_random 369 178774 178683 Arg TCT ctcatccagc tgttttgacg178737 178719 72.34 51.8920.45 Both
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrM 1 2764 2837 Leu TAA aacatgacat atgattacaa0 0 35.56 10.3725.19 Both
chrM 2 15505 15576 Thr TGT caataaccaa caaaaaggaa0 0 49.57 26.9622.61 Both


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.