GtRNAdb

tRNAscan-SE Analysis of Tarsier syrichta (Tarsier) (Aug 2008)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA330
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)1
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs332


Intron Summary

tRNAs with introns
73
Pro
TGG
16
Ser
TGA
1
Arg
TCG
1
Arg
TCT
1
Leu
CAA
2
Lys
TTT
1
His
ATG
1
Gln
TTG
42
Ile
TAT
2
Tyr
GTA
5
Supres
TTA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
9
GGC
 
CGC
3
TGC
3
15
GlyACC
 
GCC
6
CCC
4
TCC
2
12
ProAGG
5
GGG
 
CGG
2
TGG
17
24
ThrAGT
7
GGT
 
CGT
1
TGT
3
11
ValAAC
5
GAC
 
CAC
4
TAC
4
13

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
9
GGA
 
CGA
2
TGA
4
ACT
 
GCT
6
 
 
 
 
21
ArgACG
3
GCG
 
CCG
2
TCG
4
 
 
 
 
CCT
2
TCT
3
14
LeuAAG
3
GAG
 
CAG
2
TAG
3
 
 
 
 
CAA
3
TAA
66
77

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
6
 
 
 
 
6
AsnATT
1
GTT
8
 
 
 
 
9
Lys 
 
 
 
CTT
4
TTT
10
14
AspATC
 
GTC
6
 
 
 
 
6
Glu 
 
 
 
CTC
4
TTC
6
10
HisATG
1
GTG
7
 
 
 
 
8
Gln 
 
 
 
CTG
3
TTG
45
48

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
4
GAT
 
 
 
TAT
2
6
Met 
 
 
 
CAT
6
 
 
6
TyrATA
 
GTA
6
 
 
 
 
6
Supres 
 
 
 
CTA
 
TTA
1
1
CysACA
1
GCA
21
 
 
 
 
22
Trp 
 
 
 
CCA
2
 
 
2
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.