GtRNAdb

tRNAscan-SE Analysis of Vibrio vulnificus YJ016

>> Main Overview
>> tRNAs by Isotype
>> tRNAs by Locus
>> Secondary Structures
>> tRNA Alignments
>> FASTA Seqs
>> Run Options/Stats
>> Analysis Notes
>> UCSC Genome Browser
>> Genome DB
>> Genome Seq
Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.


[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]


Ala tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCAGTTCGATCCTGCTTAGCTCCACCA chrI.trna57-AlaTGC Sc: 91.16 GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCAGTTCGATCCTGCTTAGCTCCACCA chrI.trna2-AlaTGC Sc: 91.16 GGGGTTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCTGCGGTTCGATCCCGCATAGCTCCACCA chrI.trna63-AlaTGC Sc: 86.08 GGGGTTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCTGCGGTTCGATCCCGCATAGCTCCACCA chrI.trna11-AlaTGC Sc: 86.08

Arg tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGTCCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtCAGAGGTTCGAATCCTCTCGGACGCGCCA chrI.trna74-ArgACG Sc: 87.93 GCGTCCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtCAGAGGTTCGAATCCTCTCGGACGCGCCA chrI.trna72-ArgACG Sc: 87.93 GCGCTCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtCAGAGGTTCGAATCCTCTCGAGCGCGCCA chrI.trna75-ArgACG Sc: 86.52 GCGCTCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtCAGAGGTTCGAATCCTCTCGAGCGCGCCA chrI.trna73-ArgACG Sc: 86.52 GCGCTCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtCAGAGGTTCGAATCCTCTCGAGCGCGCCA chrI.trna71-ArgACG Sc: 86.52 GCGCTCGTAGCTCAGCTGGAtAGAGTACCTGGCTACGAACCAGGCG...........GtCAGAGGTTCGAATCCTCTCGAGCGCGCCA chrI.trna69-ArgACG Sc: 86.52 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAGCTGGAtAGAGCGTTGGCCTCCGGAGCCAAAG...........GtCGAAGGTTCGAATCCTTTCGGGCGCGCCA chrI.trna4-ArgCCG Sc: 92.95 >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTCCCATGGCACAGCTGGAtAGCGCGGCCCCCTCCTAAGGGGCAG...........GtCACAGGTTCAAATCCTGTTGGGAGCGCCA chrI.trna84-ArgCCT Sc: 81.93 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCTTAGCTCAGCTGGAtAGAGCACGTCCCTTCTAAGGATGTG...........GtCGTAGGTTCGAATCCTACAGGGCGTGCCA chrI.trna78-ArgTCT Sc: 88.75

Asn tRNAs

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... TCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCAGGAGGAGCCA chrII.trna9-AsnGTT Sc: 85.69 TCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCAGGAGGAGCCA chrI.trna80-AsnGTT Sc: 85.69 TCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCAGGAGGAGCCA chrI.trna34-AsnGTT Sc: 85.69 TCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCAGGAGGAGCCA chrI.trna32-AsnGTT Sc: 85.69 TCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCAGGAGGAGCCA chrI.trna28-AsnGTT Sc: 85.69

Asp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna67-AspGTC Sc: 97.44 GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna58-AspGTC Sc: 97.44 GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna40-AspGTC Sc: 97.44 GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna36-AspGTC Sc: 97.44 GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna17-AspGTC Sc: 97.44 GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chrI.trna13-AspGTC Sc: 97.44

Cys tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCGCGTTGGCAGAGTGGCT.ATGCAGCGGATTGCAAATCCGTGG...........ACCTCGGTTCGACTCCGGGACGCGCCTCCA chrII.trna6-CysGCA Sc: 64.59 GGCGCGTTGGCAGAGTGGCT.ATGCAGCGGATTGCAAATCCGTGG...........ACCTCGGTTCGACTCCGGGACGCGCCTCCA chrI.trna20-CysGCA Sc: 64.59 GGCGCGTTGGCAGAGGGGCT.ATGCAGCGGATTGCAAATCCGTGG...........ACCTCGGTTCGACTCCGGGACGCGCCTCCA chrII.trna11-CysGCA Sc: 60.37

Gln tRNAs

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGTCTATCGCCAAGCGGTA.AGGCAGCGGCTTTTGATGCCGCCA...........TtCCCTGGTTCGAATCCAGGTAGACCTGCCA chrI.trna98-GlnTTG Sc: 70.98 AGGTCTATCGCCAAGCGGTA.AGGCAGCGGCTTTTGATGCCGCCA...........TtCCCTGGTTCGAATCCAGGTAGACCTGCCA chrI.trna96-GlnTTG Sc: 70.98 AGGTCTATCGCCAAGCGGTA.AGGCAGCGGCTTTTGATGCCGCCA...........TtCCCTGGTTCGAATCCAGGTAGACCTGCCA chrI.trna94-GlnTTG Sc: 70.98 AGGTCTATCGCCAAGCGGTA.AGGCAGCGGCTTTTGATGCCGCCA...........TtCCCTGGTTCGAATCCAGGTAGACCTGCCA chrI.trna90-GlnTTG Sc: 70.98 AGGTCTATCGCCAAGCGGTA.AGGCAGCGGCTTTTGATGCCGCCA...........TtCCCTGGTTCGAATCCAGGTAGACCTGCCA chrI.trna87-GlnTTG Sc: 70.98

Glu tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGACTCCCCTACGGGATACCA chrII.trna1-GluTTC Sc: 57.32 GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGACTCCCCTACGGGATACCA chrI.trna9-GluTTC Sc: 57.32 GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGACTCCCCTACGGGATACCA chrI.trna65-GluTTC Sc: 57.32 GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGACTCCCCTACGGGATACCA chrI.trna61-GluTTC Sc: 57.32 GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGACTCCCCTACGGGATACCA chrI.trna37-GluTTC Sc: 57.32 GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGACTCCCCTACGGGATACCA chrI.trna35-GluTTC Sc: 57.32 GTCCCGTTCGTCTAGAGGCctA.GGACACCGCCCTTTCACGGCGGTA...........ACAGGGGTTCGACTCCCCTACGGGATACCA chrI.trna14-GluTTC Sc: 57.32

Gly tRNAs

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGACACTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCACGAGTTCGAACCTCGTGTGTCGCTCCA chrI.trna51-GlyGCC Sc: 86.20 GCGACACTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCACGAGTTCGAACCTCGTGTGTCGCTCCA chrI.trna49-GlyGCC Sc: 86.20 GCGACACTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCACGAGTTCGAACCTCGTGTGTCGCTCCA chrI.trna48-GlyGCC Sc: 86.20 GCGACACTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCACGAGTTCGAACCTCGTGTGTCGCTCCA chrI.trna47-GlyGCC Sc: 86.20 GCGACACTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCACGAGTTCGAACCTCGTGTGTCGCTCCA chrI.trna46-GlyGCC Sc: 86.20 GCGACACTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCACGAGTTCGAACCTCGTGTGTCGCTCCA chrI.trna45-GlyGCC Sc: 86.20 GCGACACTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCACGAGTTCGAACCTCGTGTGTCGCTCCA chrI.trna23-GlyGCC Sc: 86.20 GCGACACTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCACGAGTTCGAACCTCGTGTGTCGCTCCA chrI.trna21-GlyGCC Sc: 86.20 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGCATCGTATAAT.GGCtA.TTACCTCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCGATTCCCGCTGCCCGCTCCA chrII.trna10-GlyTCC Sc: 64.85 GCGGGCATCGTATAAT.GGCtA.TTACCTCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCGATTCCCGCTGCCCGCTCCA chrI.trna43-GlyTCC Sc: 64.85

His tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGCTATAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTT...........GtCGCGGGTTCGAATCCCGTTAGCCACCCCA chrI.trna7-HisGTG Sc: 83.47 GTGGCTATAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTT...........GtCGCGGGTTCGAATCCCGTTAGCCACCCCA chrI.trna5-HisGTG Sc: 83.47

Ile tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCTGTAGCTCAGGTGGTtAGAGCGTACGCCTGATAAGCGTAAG...........GtCGGTGGTTCGAGTCCACTCAGACCCACCA chrI.trna56-IleGAT Sc: 96.04 GGGTCTGTAGCTCAGGTGGTtAGAGCGTACGCCTGATAAGCGTAAG...........GtCGGTGGTTCGAGTCCACTCAGACCCACCA chrI.trna1-IleGAT Sc: 96.04

Leu tRNAs

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>...........<<<...>>>>>.......<<<<<.<<<<<<<.... GCCGAGATGGTGAAATTGGTaGACACACTAGCATGAGGTGCTAGCGCCTA...........TGGTGTGAGGGTTCGAGTCCCTC.TCTCGGCACCA chrII.trna12-LeuGAG Sc: 70.67 GCCGAGATGGTGAAATTGGTaGACACACTAGCATGAGGTGCTAGCGCCTA...........TGGTGTGAGGGTTCGAGTCCCTC.TCTCGGCACCA chrI.trna76-LeuGAG Sc: 70.67 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGAAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GCC..GCAA.......GGTGTGAGAGTTCGAGTCTCTC.CTTCCGCACCA chrI.trna93-LeuTAG Sc: 77.41 GCGGAAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GCC..GCAA.......GGTGTGAGAGTTCGAGTCTCTC.CTTCCGCACCA chrI.trna89-LeuTAG Sc: 77.41 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.>.........<.<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGAAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GCCGC.........GAGGTGTGAGAGTTCGAGTCTCTC.CTTCCGCACCA chrI.trna99-LeuTAG Sc: 74.05 GCGGAAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GCCGC.........GAGGTGTGAGAGTTCGAGTCTCTC.CTTCCGCACCA chrI.trna97-LeuTAG Sc: 74.05 GCGGAAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GCCGC.........GAGGTGTGAGAGTTCGAGTCTCTC.CTTCCGCACCA chrI.trna95-LeuTAG Sc: 74.05 GCGGAAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GCCGC.........GAGGTGTGAGAGTTCGAGTCTCTC.CTTCCGCACCA chrI.trna91-LeuTAG Sc: 74.05 GCGGAAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GCCGC.........GAGGTGTGAGAGTTCGAGTCTCTC.CTTCCGCACCA chrI.trna86-LeuTAG Sc: 74.05 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGTGTGGTGAAATTGGTaTACACGACGGATTCAAAATCCGTT.TCCTT.........CGGGAGTGGCGGTTCAAGTCCGCC.CACCGGTACCA chrI.trna60-LeuCAA Sc: 70.21 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCTGGTGGTGAAATTGGTaGACACAAGGGATTTAAAATCCCTC.GACT.TTCG......AGTCGTGCCGGTTCAAGTCCGGC.CCGGGGCACCA chrII.trna5-LeuTAA Sc: 72.66 GCCCTGGTGGTGAAATTGGTaGACACAAGGGATTTAAAATCCCTC.GACT.TTCG......AGTCGTGCCGGTTCAAGTCCGGC.CCGGGGCACCA chrI.trna22-LeuTAA Sc: 72.66

Lys tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCGAATCCTGCACGACCCACCA chrII.trna2-LysTTT Sc: 97.44 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCGAATCCTGCACGACCCACCA chrI.trna62-LysTTT Sc: 97.44 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCGAATCCTGCACGACCCACCA chrI.trna38-LysTTT Sc: 97.44 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCGAATCCTGCACGACCCACCA chrI.trna15-LysTTT Sc: 97.44 GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCGAATCCTGCACGACCCACCA chrI.trna10-LysTTT Sc: 97.44

Met tRNAs

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<.... GGCTACGTAGCTCAGCT.GGTtA.GAGCACATCACTCATAATGATGGG...........GtCACAGGTTCGAATCCCGTCGTAGCCACCA chrI.trna92-MetCAT Sc: 95.33 GGCTACGTAGCTCAGCT.GGTtA.GAGCACATCACTCATAATGATGGG...........GtCACAGGTTCGAATCCCGTCGTAGCCACCA chrI.trna88-MetCAT Sc: 95.33 GGCTACGTAGCTCAGCT.GGTtA.GAGCACATCACTCATAATGATGGG...........GtCACAGGTTCGAATCCCGTCGTAGCCACCA chrI.trna85-MetCAT Sc: 95.33 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCCCCTTAGCTCAGT..GGTtA.GAGCAGTCGACTCATAATCGATTG...........GtCCCCAGTTCAAGTCTGGGAGGGGCCACCA chrI.trna100-MetCAT Sc: 91.55 .>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCTtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chrI.trna77-MetCAT Sc: 88.17 CGCGGGGTGGAGCAGCTtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chrI.trna55-MetCAT Sc: 88.17 CGCGGGGTGGAGCAGCTtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chrI.trna53-MetCAT Sc: 88.17 CGCGGGGTGGAGCAGCTtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGGCCCCCGCAACCA chrI.trna50-MetCAT Sc: 88.17 CGCGGGATGGAGCAGCTtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCTCCCGCAACCA chrI.trna54-MetCAT Sc: 86.30 CGCGGGATGGAGCAGCTtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCTCCCGCAACCA chrI.trna52-MetCAT Sc: 86.30

Phe tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCGGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGT...........GtCGGTGGTTCGATTCCGCCTCCGGGCACCA chrI.trna29-PheGAA Sc: 88.50 GCCCGGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGT...........GtCGGTGGTTCGATTCCGCCTCCGGGCACCA chrI.trna26-PheGAA Sc: 88.50 GCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGT...........GtCGGTGGTTCGATTCCGCCTCGAGGCACCA chrII.trna8-PheGAA Sc: 87.07 GCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGT...........GtCGGTGGTTCGATTCCGCCTCGAGGCACCA chrI.trna31-PheGAA Sc: 87.07

Pro tRNAs

>>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<................>>>>>.......<<<<<<<<<<<<.... CGGACTGTAGCGCAGCTtGGTAGCGCACCGTCATGGGGTGTCGGGG...........GtCGGAGGTTCAAATCCTCTCAGTCCGACCA chrI.trna83-ProGGG Sc: 78.82 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGTGAATAGCGCAGCTtGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCGGGGGTTCGAATCCCTCTTCACCGACCA chrI.trna8-ProTGG Sc: 90.76 CGGTGAATAGCGCAGCTtGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCGGGGGTTCGAATCCCTCTTCACCGACCA chrI.trna6-ProTGG Sc: 90.76 CGGTGAATAGCGCAGCTtGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCGGGGGTTCGAATCCCTCTTCACCGACCA chrI.trna19-ProTGG Sc: 90.76

SeC tRNAs

Ser tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>.........<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGTGAGTTGTCCGAGTGGCtgA.AGGAGCACGCCTGGAAAGTGTGTGTACG..GCAA...CGTACCGAGAGTTCGAATCTCTC..ACTCACCGCCA chrI.trna79-SerGGA Sc: 65.79 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGGCTGAGTGGTtgA.AAGCACCGGTCTTGAAAACCGGCGTACGT.TAATa.GCGTACCTAGGGTTCAAATCCCTA..TCTCTCCGCCA chrII.trna7-SerTGA Sc: 75.59 GGAGAGATGGCTGAGTGGTtgA.AAGCACCGGTCTTGAAAACCGGCGTACGT.TAATa.GCGTACCTAGGGTTCAAATCCCTA..TCTCTCCGCCA chrI.trna81-SerTGA Sc: 75.59 GGAGAGATGGCTGAGTGGTtgA.AAGCACCGGTCTTGAAAACCGGCGTACGT.TAATa.GCGTACCTAGGGTTCAAATCCCTA..TCTCTCCGCCA chrI.trna3-SerTGA Sc: 75.59 >>>>>>>...>>............<<..>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGAGAGATGGCTGAGTGGTtgA.AAGAACCGGTCTTGAAAACCGGCGTACGT.TAATa.GCGTACCTAGGGTTCAAATCCCTA..TCTCTCCGCCA chrII.trna4-SerTGA Sc: 67.80 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<.... GGTGAGGTGGCCGAGAGGCtgA.AGGCGCTCCCCTGCTAAGGGAGTATACGGTTTA.tCCCGTATCGAGGGTTCGAATCCCTC..CTTCACCGCCA chrI.trna70-SerGCT Sc: 67.92 GGTGAGGTGGCCGAGAGGCtgA.AGGCGCTCCCCTGCTAAGGGAGTATACGGTTTA.tCCCGTATCGAGGGTTCGAATCCCTC..CTTCACCGCCA chrI.trna68-SerGCT Sc: 67.92

Sup tRNAs

Thr tRNAs

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGATATAGCTCAGGTGGTAGAGCGCATCCTTGGTAAGGATGAG...........GtCGGCAGTTCGAGTCTGCCTATCAGCACCA chrI.trna44-ThrGGT Sc: 91.10 GCTGATATGGCTCAGTCGGTAGAGCGCATCCTTGGTAAGGATGAG...........GtCCCCAGTTCGATTCTGGGTATCAGCACCA chrI.trna66-ThrGGT Sc: 89.50 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<.... GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGTCGGCACCA chrI.trna41-ThrTGT Sc: 91.83 GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGTCGGCACCA chrI.trna33-ThrTGT Sc: 91.83 GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGTCGGCACCA chrI.trna30-ThrTGT Sc: 91.83 GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGTCGGCACCA chrI.trna27-ThrTGT Sc: 91.83

Trp tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGGTGTAGCTCcAATTGGCAGAGCAGCGGATTCCAAATCCGCGT...........GtTGGGAGTTCGAATCTCTCCACCCCTGCCA chrI.trna59-TrpCCA Sc: 74.44 AGGGGTGTAGCTCcAATTGGCAGAGCAGCGGATTCCAAATCCGCGT...........GtTGGGAGTTCGAATCTCTCCACCCCTGCCA chrI.trna18-TrpCCA Sc: 74.44

Tyr tRNAs

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>.........<.<...>>>>>.......<<<<<<<<<<<<.... GGAGGGGTTCCCGAGTGGCcaA.AGGGAGCAGACTGTAAATCTGCCGGCTC.......CGCCTtCGATGGTTCGAATCCGTCCCCCTCCACCA chrI.trna42-TyrGTA Sc: 65.45 >>.>>>>..>>>............<<<.>>>>>.......<<<<<..>.>.........<.<...>>>>>.......<<<<<<<<<.<<.... GGAGGGGTTCCCGAGTGGCcaA.AGGGAGCAGACTGTAAATCTGCCGGCTC.......CGCCTtCGATGGTTCGAATCCGTCCCCCCCCACCA chrI.trna82-TyrGTA Sc: 60.09

Val tRNAs

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGTCCATAGCTCAGTTGGTtAGAGTACTACCTTGACATGGTAGGG...........GtCGGTGGTTCGAGTCCACTTGGACGCACCA chrI.trna25-ValGAC Sc: 90.33 GCGTCCGTAGCTCAGTTGGTtAGAGTATCGCCTTGACATGGCGGGG...........GtCGGTGGTTCGAGTCCACTCGGACGCACCA chrI.trna24-ValGAC Sc: 88.63 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTAGCTCAGTTGGG.AGAGCACCTGCCTTACAAGCAGGGG...........GtCACTGGTTCGAACCCGGTATCGCCCACCA chrII.trna3-ValTAC Sc: 95.98 GGGCGATTAGCTCAGTTGGG.AGAGCACCTGCCTTACAAGCAGGGG...........GtCACTGGTTCGAACCCGGTATCGCCCACCA chrI.trna64-ValTAC Sc: 95.98 GGGCGATTAGCTCAGTTGGG.AGAGCACCTGCCTTACAAGCAGGGG...........GtCACTGGTTCGAACCCGGTATCGCCCACCA chrI.trna39-ValTAC Sc: 95.98 GGGCGATTAGCTCAGTTGGG.AGAGCACCTGCCTTACAAGCAGGGG...........GtCACTGGTTCGAACCCGGTATCGCCCACCA chrI.trna16-ValTAC Sc: 95.98 GGGCGATTAGCTCAGTTGGG.AGAGCACCTGCCTTACAAGCAGGGG...........GtCACTGGTTCGAACCCGGTATCGCCCACCA chrI.trna12-ValTAC Sc: 95.98

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.