GtRNAdb

tRNAscan-SE Analysis of Vibrio vulnificus YJ016

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>> Genome Seq
tRNAs Sorted by Genome Locusplain text version

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrI 1 34326 34402 Ile GAT agcatctagt ctcaaacgat0 0 96.04 72.8823.16  
chrI 2 34413 34488 Ala TGC ctcaaacgat tctttaaggg0 0 91.16 71.3719.79  
chrI 3 38032 38122 Ser TGA gacaatttgt ctacatagaa0 0 75.59 47.6627.93  
chrI 4 49176 49252 Arg CCG gatagggcat tttggatgcc0 0 92.95 72.2520.70  
chrI 5 49291 49366 His GTG aaaaacaatg ttcttttcta0 0 83.47 63.2420.23  
chrI 6 49393 49469 Pro TGG aaacatttgt ctattatttg0 0 90.76 65.8924.87  
chrI 7 49544 49619 His GTG caatctgatg ttctttcttt0 0 83.47 63.2420.23  
chrI 8 49644 49720 Pro TGG aataaaattt cattctaaag0 0 90.76 65.8924.87  
chrI 9 179498 179573 Glu TTC gtatcttagt tgggtcgtta0 0 57.32 29.7327.59  
chrI 10 179575 179650 Lys TTT gggataccat ttacttcaag0 0 97.44 76.1821.26  
chrI 11 179665 179740 Ala TGC ttcaagagtt ttcttgaacg0 0 86.08 65.7220.36  
chrI 12 179755 179830 Val TAC tgaacgcaat ctctttaaat0 0 95.98 79.8816.10  
chrI 13 183328 183404 Asp GTC taaccagtgc cttattccag0 0 97.44 78.9518.49  
chrI 14 718843 718918 Glu TTC gtatcttagt tgggtcgtta0 0 57.32 29.7327.59  
chrI 15 718920 718995 Lys TTT gggataccat tttccttccg0 0 97.44 76.1821.26  
chrI 16 719024 719099 Val TAC caaataatgt ctctttaaat0 0 95.98 79.8816.10  
chrI 17 722596 722672 Asp GTC taaccagtgc cttattctaa0 0 97.44 78.9518.49  
chrI 18 722742 722818 Trp CCA atgaatcgac tatttaaggc0 0 74.44 51.3523.09  
chrI 19 940448 940524 Pro TGG tgaaacatct ctttaagaaa0 0 90.76 65.8924.87  
chrI 20 1249797 1249870 Cys GCA ggcgatgtaa tttgcgacac0 0 64.59 38.4826.11  
chrI 21 1249874 1249949 Gly GCC gcctccattt aatttaaaga0 0 86.20 54.8931.31  
chrI 22 1250010 1250096 Leu TAA agttttgtgt tttaatatcg0 0 72.66 38.7333.93  
chrI 23 1250122 1250197 Gly GCC aagaacagat aacacgaaag0 0 86.20 54.8931.31  
chrI 24 1535714 1535790 Val GAC ctcacgagat ttcaaacgaa0 0 88.63 69.7818.85  
chrI 25 1535826 1535902 Val GAC agtgcgtaaa tattcgttct0 0 90.33 65.4024.93  
chrI 26 2938124 2938199 Phe GAA gcgctccgtc cgaattcaaa0 0 88.50 67.4521.05  
chrI 27 2938254 2938329 Thr TGT aatatagtgt ttcttaaaat0 0 91.83 73.9817.85  
chrI 28 2938344 2938419 Asn GTT taaaatttgt cctttaaaag0 0 85.69 62.5523.14  
chrI 29 2940513 2940588 Phe GAA acacctcgtc cgaatttaaa0 0 88.50 67.4521.05  
chrI 30 2940647 2940722 Thr TGT aatatagtgc ttcttttgcc0 0 91.83 73.9817.85  
chrI 31 2940730 2940805 Phe GAA ccattctttt cttattttaa0 0 87.07 64.7522.32  
chrI 32 2940845 2940920 Asn GTT accgaatagt ctttcaaacg0 0 85.69 62.5523.14  
chrI 33 2940956 2941031 Thr TGT ttgtttaggc tttataacgt0 0 91.83 73.9817.85  
chrI 34 2941072 2941147 Asn GTT acagaatagt ccttagaaaa0 0 85.69 62.5523.14  
chrI 35 3303364 3303289 Glu TTC gtatcttagt tctttaagca0 0 57.32 29.7327.59  
chrI 36 3299852 3299776 Asp GTC taaccagtgc attattccag0 0 97.44 78.9518.49  
chrI 37 3261559 3261484 Glu TTC gtatcttagt tgggtcgtta0 0 57.32 29.7327.59  
chrI 38 3261482 3261407 Lys TTT gggataccat tttccttccg0 0 97.44 76.1821.26  
chrI 39 3261378 3261303 Val TAC caaataatgt tctttaagca0 0 95.98 79.8816.10  
chrI 40 3257869 3257793 Asp GTC taaccagtgc cttatttaga0 0 97.44 78.9518.49  
chrI 41 3251574 3251499 Thr TGT ctccacttat ttctctccca0 0 91.83 73.9817.85  
chrI 42 3251451 3251367 Tyr GTA tgaaaaattt tattctttag0 0 65.45 39.2226.23  
chrI 43 3251331 3251257 Gly TCC gttacgtgtt ctcacaattt0 0 64.85 36.4228.43  
chrI 44 3251242 3251167 Thr GGT caatttgagt gctctcaaag0 0 91.10 63.2627.84  
chrI 45 3161695 3161620 Gly GCC gttgttgatt gatttagaag0 0 86.20 54.8931.31  
chrI 46 3161509 3161434 Gly GCC acgatgacat aattacagtt0 0 86.20 54.8931.31  
chrI 47 3161400 3161325 Gly GCC acgatgacat gatttagaag0 0 86.20 54.8931.31  
chrI 48 3161229 3161154 Gly GCC acgatgacat gatttagaag0 0 86.20 54.8931.31  
chrI 49 3161057 3160982 Gly GCC cgatgacatt ctttctttaa0 0 86.20 54.8931.31  
chrI 50 3160927 3160851 Met CAT acaatacgga atttctacat0 0 88.17 63.4324.74  
chrI 51 3160816 3160741 Gly GCC tttaacaagt ctttttcaag0 0 86.20 54.8931.31  
chrI 52 3160687 3160611 Met CAT acattacgga atttcaaagc0 0 86.30 59.8026.50  
chrI 53 3160568 3160492 Met CAT acaatacgga atttcaaagc0 0 88.17 63.4324.74  
chrI 54 3160450 3160374 Met CAT catacatgga atttcaaagc0 0 86.30 59.8026.50  
chrI 55 3160331 3160255 Met CAT acaatacgga attttcggac0 0 88.17 63.4324.74  
chrI 56 3041342 3041266 Ile GAT agcatctagt ctcaaacgat0 0 96.04 72.8823.16  
chrI 57 3041255 3041180 Ala TGC ctcaaacgat tctttaaggg0 0 91.16 71.3719.79  
chrI 58 3037742 3037666 Asp GTC taaccagtgc cttatttaga0 0 97.44 78.9518.49  
chrI 59 3037612 3037536 Trp CCA agaaaaattt tgtttaaggc0 0 74.44 51.3523.09  
chrI 60 2963699 2963615 Leu CAA gcctaaagat tacatagaaa0 0 70.21 40.4029.81  
chrI 61 2952601 2952526 Glu TTC gtatcttagt tgggtcgtta0 0 57.32 29.7327.59  
chrI 62 2952524 2952449 Lys TTT gggataccat ttacttcaag0 0 97.44 76.1821.26  
chrI 63 2952434 2952359 Ala TGC ttcaagagtt ttcttgaacg0 0 86.08 65.7220.36  
chrI 64 2952344 2952269 Val TAC tgaacgcaat ctctttaaat0 0 95.98 79.8816.10  
chrI 65 2946863 2946788 Glu TTC gtatcttagt tctttaagca0 0 57.32 29.7327.59  
chrI 66 2943336 2943261 Thr GGT agttttaaat tgattttgct0 0 89.50 59.0430.46  
chrI 67 2943073 2942997 Asp GTC taaccagtgc cttataccaa0 0 97.44 78.9518.49  
chrI 68 2858134 2858043 Ser GCT tccgcaagac ttcttgcgaa0 0 67.92 43.2324.69  
chrI 69 2858013 2857937 Arg ACG gatgaattgc tatcgtaaaa0 0 86.52 64.1322.39  
chrI 70 2857913 2857822 Ser GCT aacaaaagac tttattgaca0 0 67.92 43.2324.69  
chrI 71 2857737 2857661 Arg ACG agaatattgc tctcttctac0 0 86.52 64.1322.39  
chrI 72 2857570 2857494 Arg ACG aaacacctgc ctttctcttt0 0 87.93 66.6421.29  
chrI 73 2857449 2857373 Arg ACG aatatattgc tttcttaaaa0 0 86.52 64.1322.39  
chrI 74 2857283 2857207 Arg ACG aaacacctgc ctttctcttc0 0 87.93 66.6421.29  
chrI 75 2857164 2857088 Arg ACG agaatattgc ttatttaaaa0 0 86.52 64.1322.39  
chrI 76 2751382 2751299 Leu GAG ctttaaaatt ttgattttac0 0 70.67 39.9730.70  
chrI 77 2751241 2751165 Met CAT gctagtcgga attttcgatt0 0 88.17 63.4324.74  
chrI 78 2426322 2426246 Arg TCT tccctgtagc tttattctaa0 0 88.75 67.7521.00  
chrI 79 2282086 2281999 Ser GGA aatttgattc cattcaagtt0 0 65.79 25.8939.90  
chrI 80 1208789 1208714 Asn GTT gtgaagcaat aattctaaaa0 0 85.69 62.5523.14  
chrI 81 1179114 1179024 Ser TGA tgcccgcatt ctttagtaaa0 0 75.59 47.6627.93  
chrI 82 1135115 1135031 Tyr GTA aaacacccct tattcttcgt0 0 60.09 39.8820.21  
chrI 83 1067653 1067577 Pro GGG taactgccat tacacctaaa0 0 78.82 51.6427.18  
chrI 84 952622 952546 Arg CCT taataagcct tcttactcaa0 0 81.93 57.3424.59  
chrI 85 925341 925265 Met CAT acatggtttt tccctaagaa0 0 95.33 76.0119.32  
chrI 86 925226 925142 Leu TAG aggaatagtt tgttttcagc0 0 74.05 47.3726.68  
chrI 87 925131 925057 Gln TTG tgttttcagc actatttaag0 0 70.98 39.0431.94  
chrI 88 924979 924903 Met CAT tccaaaagat ttcctaaaca0 0 95.33 76.0119.32  
chrI 89 924860 924776 Leu TAG ggaataaaat ttattattta0 0 77.41 49.2528.16  
chrI 90 924718 924644 Gln TTG tatcaactgc ctatttagct0 0 70.98 39.0431.94  
chrI 91 924598 924514 Leu TAG gacaatttat taaattgttg0 0 74.05 47.3726.68  
chrI 92 924502 924426 Met CAT aaattgttgt ttcctaaaca0 0 95.33 76.0119.32  
chrI 93 924381 924297 Leu TAG aataaataat ttatttacgt0 0 77.41 49.2528.16  
chrI 94 924242 924168 Gln TTG tgtcagctgt ctatttagct0 0 70.98 39.0431.94  
chrI 95 924123 924039 Leu TAG aaaattcgat tcgaatttct0 0 74.05 47.3726.68  
chrI 96 923983 923909 Gln TTG tgtcatctgc ctcattcgtt0 0 70.98 39.0431.94  
chrI 97 923863 923779 Leu TAG acaaatcgat tcgatttgaa0 0 74.05 47.3726.68  
chrI 98 923722 923648 Gln TTG tgtcatctgc ctatttagct0 0 70.98 39.0431.94  
chrI 99 923603 923519 Leu TAG acaatttgat tcattgaaca0 0 74.05 47.3726.68  
chrI 100 542379 542304 Met CAT gctctgattt tcttctcttc0 0 91.55 64.5427.01  
 

Sequence
Name
tRNA
#
tRNA BoundsLink to
Genome Browser
tRNA
Isotype
AnticodonUpstream
Region
Downstream
Region
Intron BoundsScores First-Pass
Scanner
Begin EndBegin EndTotal (Cove) HMM2' Str
chrII 1 307253 307328 Glu TTC gtatcttagt tgggtcgtta0 0 57.32 29.7327.59  
chrII 2 307330 307405 Lys TTT gggataccat tttccttccg0 0 97.44 76.1821.26  
chrII 3 307434 307509 Val TAC caaataatgt tctttaagca0 0 95.98 79.8816.10  
chrII 4 311051 311141 Ser TGA gacaatttgt ctacatagaa0 0 67.80 41.8725.93  
chrII 5 682826 682912 Leu TAA agtatgcgtt tcctaactca0 0 72.66 38.7333.93  
chrII 6 682945 683018 Cys GCA ttatctaaaa ttctcttctc0 0 64.59 38.4826.11  
chrII 7 1400790 1400880 Ser TGA ctcggcccat cattgcattg0 0 75.59 47.6627.93  
chrII 8 1400913 1400988 Phe GAA tgaacaattt cttattaagt0 0 87.07 64.7522.32  
chrII 9 1401025 1401100 Asn GTT acagaatagt catttaaaaa0 0 85.69 62.5523.14  
chrII 10 1193535 1193461 Gly TCC ctcacgatgc attctctgat0 0 64.85 36.4228.43  
chrII 11 1022880 1022807 Cys GCA aacacagtaa ttatttagaa0 0 60.37 34.2526.12  
chrII 12 516538 516455 Leu GAG gacatcctgt ttcctttata0 0 70.67 39.9730.70  


The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.