GtRNAdb

tRNAscan-SE Analysis of Vitis vinifera (Grapevine 12X)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA550
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)2
tRNAs with undetermined
or unknown isotypes
8
Predicted pseudogenes127
Total tRNAs688


Intron Summary

tRNAs with introns
32
Pro
AGG
3
Ser
TGA
1
Gln
CTG
3
Ile
TAT
2
Met
CAT
11
Tyr
ATA
2
Tyr
GTA
10


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
11
GGC
 
CGC
5
TGC
47
63
GlyACC
 
GCC
17
CCC
6
TCC
12
35
ProAGG
12
GGG
 
CGG
4
TGG
15
31
ThrAGT
10
GGT
2
CGT
3
TGT
9
24
ValAAC
15
GAC
 
CAC
11
TAC
5
31

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
12
GGA
1
CGA
3
TGA
13
ACT
 
GCT
8
 
 
 
 
37
ArgACG
11
GCG
 
CCG
4
TCG
5
 
 
 
 
CCT
8
TCT
6
34
LeuAAG
10
GAG
 
CAG
7
TAG
9
 
 
 
 
CAA
11
TAA
14
51

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
19
 
 
 
 
19
AsnATT
1
GTT
21
 
 
 
 
22
Lys 
 
 
 
CTT
15
TTT
11
26
AspATC
2
GTC
23
 
 
 
 
25
Glu 
 
 
 
CTC
19
TTC
13
32
HisATG
1
GTG
13
 
 
 
 
14
Gln 
 
 
 
CTG
11
TTG
8
19

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
 
 
 
TAT
9
21
Met 
 
 
 
CAT
26
 
 
26
TyrATA
1
GTA
18
 
 
 
 
19
Supres 
 
 
 
CTA
 
TTA
2
2
CysACA
 
GCA
11
 
 
 
 
11
Trp 
 
 
 
CCA
10
 
 
10
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.