GtRNAdb

tRNAscan-SE Analysis of Xenopus tropicalis (frog) (JGI 4.2 Nov 2009)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA2581
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)3
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs2586


Intron Summary

tRNAs with introns
269
Gly
TCC
1
Arg
TCT
102
Leu
CAA
18
Leu
TAA
1
Glu
TTC
1
Ile
TAT
39
Tyr
GTA
106
Supres
CTA
1


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
65
GGC
 
CGC
33
TGC
48
146
GlyACC
 
GCC
87
CCC
101
TCC
78
266
ProAGG
61
GGG
1
CGG
32
TGG
51
145
ThrAGT
135
GGT
 
CGT
29
TGT
89
253
ValAAC
54
GAC
 
CAC
50
TAC
37
141

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
40
GGA
1
CGA
22
TGA
41
ACT
 
GCT
99
 
 
 
 
203
ArgACG
32
GCG
1
CCG
7
TCG
33
 
 
 
 
CCT
29
TCT
104
206
LeuAAG
38
GAG
1
CAG
31
TAG
27
 
 
 
 
CAA
21
TAA
46
164

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
2
GAA
56
 
 
 
 
58
AsnATT
1
GTT
48
 
 
 
 
49
Lys 
 
 
 
CTT
98
TTT
71
169
AspATC
 
GTC
60
 
 
 
 
60
Glu 
 
 
 
CTC
50
TTC
83
133
HisATG
1
GTG
39
 
 
 
 
40
Gln 
 
 
 
CTG
41
TTG
29
70

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
64
GAT
4
 
 
TAT
47
115
Met 
 
 
 
CAT
133
 
 
133
TyrATA
 
GTA
108
 
 
 
 
108
Supres 
 
 
 
CTA
1
TTA
2
3
CysACA
2
GCA
86
 
 
 
 
88
Trp 
 
 
 
CCA
34
 
 
34
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.