GtRNAdb

tRNAscan-SE Analysis of Yarrowia lipolytica CLIB99

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA510
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs510


Intron Summary

tRNAs with introns
316
Gly
TCC
11
Pro
AGG
21
Pro
CGG
2
Thr
CGT
1
Thr
TGT
3
Val
CAC
3
Ser
CGA
4
Ser
TGA
2
Ser
GCT
6
Arg
TCG
25
Leu
AAG
21
Leu
CAG
11
Leu
TAG
2
Leu
CAA
3
Phe
GAA
17
Asn
GTT
16
Lys
CTT
34
Lys
TTT
4
Asp
GTC
28
Glu
CTC
27
His
GTG
4
Gln
CTG
14
Gln
TTG
3
Ile
AAT
26
Ile
TAT
1
Tyr
GTA
14
Trp
CCA
13
 


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
30
GGC
 
CGC
2
TGC
4
36
GlyACC
 
GCC
30
CCC
 
TCC
11
41
ProAGG
21
GGG
 
CGG
2
TGG
3
26
ThrAGT
22
GGT
 
CGT
2
TGT
3
27
ValAAC
24
GAC
 
CAC
8
TAC
2
34

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
21
GGA
 
CGA
4
TGA
2
ACT
 
GCT
6
 
 
 
 
33
ArgACG
1
GCG
 
CCG
 
TCG
25
 
 
 
 
CCT
1
TCT
4
31
LeuAAG
21
GAG
 
CAG
13
TAG
2
 
 
 
 
CAA
3
TAA
1
40

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
17
 
 
 
 
17
AsnATT
 
GTT
16
 
 
 
 
16
Lys 
 
 
 
CTT
34
TTT
4
38
AspATC
 
GTC
28
 
 
 
 
28
Glu 
 
 
 
CTC
27
TTC
6
33
HisATG
 
GTG
12
 
 
 
 
12
Gln 
 
 
 
CTG
15
TTG
3
18

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
26
GAT
 
 
 
TAT
1
27
Met 
 
 
 
CAT
18
 
 
18
TyrATA
 
GTA
14
 
 
 
 
14
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
8
 
 
 
 
8
Trp 
 
 
 
CCA
13
 
 
13
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.