GtRNAdb

tRNAscan-SE Analysis of Yersinia pseudotuberculosis YPIII

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tRNA Gene Summary





tRNAs Decoding Standard 20 AA80
Selenocysteine tRNAs (TCA)1
Possible suppressor tRNAs (CTA,TTA)0
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes3
Total tRNAs84


Intron Summary

tRNAs with introns
0


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
 
GGC
2
CGC
 
TGC
3
5
GlyACC
 
GCC
4
CCC
1
TCC
1
6
ProAGG
 
GGG
1
CGG
 
TGG
2
3
ThrAGT
 
GGT
2
CGT
 
TGT
2
4
ValAAC
 
GAC
3
CAC
 
TAC
3
6

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
 
GGA
2
CGA
 
TGA
2
ACT
 
GCT
1
 
 
 
 
5
ArgACG
3
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
6
LeuAAG
 
GAG
1
CAG
4
TAG
1
 
 
 
 
CAA
1
TAA
1
8

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
2
 
 
 
 
2
AsnATT
 
GTT
3
 
 
 
 
3
Lys 
 
 
 
CTT
1
TTT
5
6
AspATC
 
GTC
3
 
 
 
 
3
Glu 
 
 
 
CTC
 
TTC
4
4
HisATG
 
GTG
1
 
 
 
 
1
Gln 
 
 
 
CTG
1
TTG
2
3

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
 
GAT
3
 
 
TAT
 
3
Met 
 
 
 
CAT
7
 
 
7
TyrATA
 
GTA
3
 
 
 
 
3
Supres 
 
 
 
CTA
 
TTA
 
0
CysACA
 
GCA
1
 
 
 
 
1
Trp 
 
 
 
CCA
1
 
 
1
SelCys 
 
 
 
 
 
TCA
1
1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.