GtRNAdb

tRNAscan-SE Analysis of Zea mays (Version 4a.53)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA1163
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)4
tRNAs with undetermined
or unknown isotypes
1
Predicted pseudogenes0
Total tRNAs1168


Intron Summary

tRNAs with introns
38
Val
CAC
1
Met
CAT
23
Tyr
GTA
14


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
67
GGC
 
CGC
22
TGC
16
105
GlyACC
 
GCC
32
CCC
11
TCC
11
54
ProAGG
15
GGG
 
CGG
9
TGG
28
52
ThrAGT
19
GGT
11
CGT
6
TGT
13
49
ValAAC
22
GAC
9
CAC
16
TAC
4
51

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
21
CGA
6
TGA
9
ACT
 
GCT
12
 
 
 
 
61
ArgACG
33
GCG
 
CCG
6
TCG
7
 
 
 
 
CCT
11
TCT
8
65
LeuAAG
28
GAG
 
CAG
13
TAG
8
 
 
 
 
CAA
17
TAA
5
71

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
23
 
 
 
 
24
AsnATT
 
GTT
44
 
 
 
 
44
Lys 
 
 
 
CTT
125
TTT
79
204
AspATC
1
GTC
40
 
 
 
 
41
Glu 
 
 
 
CTC
29
TTC
20
49
HisATG
1
GTG
23
 
 
 
 
24
Gln 
 
 
 
CTG
13
TTG
20
33

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
91
GAT
 
 
 
TAT
5
96
Met 
 
 
 
CAT
70
 
 
70
TyrATA
 
GTA
20
 
 
 
 
20
Supres 
 
 
 
CTA
4
TTA
 
4
CysACA
1
GCA
24
 
 
 
 
25
Trp 
 
 
 
CCA
25
 
 
25
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.