GtRNAdb

tRNAscan-SE Analysis of Zea mays (Version 5b.60)

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tRNA Gene Summary




tRNAs Decoding Standard 20 AA1198
Selenocysteine tRNAs (TCA)0
Possible suppressor tRNAs (CTA,TTA)4
tRNAs with undetermined
or unknown isotypes
0
Predicted pseudogenes0
Total tRNAs1202


Intron Summary

tRNAs with introns
37
Val
CAC
1
Ser
GCT
1
Met
CAT
22
Tyr
GTA
13


Four Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
AlaAGC
66
GGC
 
CGC
22
TGC
15
103
GlyACC
 
GCC
33
CCC
11
TCC
11
55
ProAGG
15
GGG
 
CGG
9
TGG
31
55
ThrAGT
20
GGT
13
CGT
6
TGT
14
53
ValAAC
22
GAC
12
CAC
16
TAC
4
54

Six Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
22
CGA
6
TGA
11
ACT
 
GCT
14
 
 
 
 
66
ArgACG
35
GCG
 
CCG
6
TCG
7
 
 
 
 
CCT
11
TCT
9
68
LeuAAG
29
GAG
 
CAG
13
TAG
9
 
 
 
 
CAA
20
TAA
5
76

Two Box tRNA Sets

IsotypetRNA Count by AnticodonTotal
PheAAA
1
GAA
25
 
 
 
 
26
AsnATT
 
GTT
49
 
 
 
 
49
Lys 
 
 
 
CTT
127
TTT
82
209
AspATC
1
GTC
42
 
 
 
 
43
Glu 
 
 
 
CTC
30
TTC
22
52
HisATG
1
GTG
26
 
 
 
 
27
Gln 
 
 
 
CTG
13
TTG
22
35

Two Box & Other tRNA Sets

IsotypetRNA Count by AnticodonTotal
IleAAT
69
GAT
 
 
 
TAT
5
74
Met 
 
 
 
CAT
79
 
 
79
TyrATA
 
GTA
21
 
 
 
 
21
Supres 
 
 
 
CTA
4
TTA
 
4
CysACA
1
GCA
25
 
 
 
 
26
Trp 
 
 
 
CCA
27
 
 
27
SelCys 
 
 
 
 
 
TCA
 
0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.